Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MUA59_RS05930 Genome accession   NZ_CP094782
Coordinates   1223673..1224446 (+) Length   257 a.a.
NCBI ID   WP_262536783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6172     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218673..1229446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA59_RS05910 (MUA59_05895) trmFO 1219017..1220324 (+) 1308 WP_208937055.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  MUA59_RS05915 (MUA59_05900) xerC 1220741..1221637 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  MUA59_RS05920 (MUA59_05905) hslV 1221634..1222179 (+) 546 WP_262608019.1 ATP-dependent protease subunit HslV -
  MUA59_RS05925 (MUA59_05910) hslU 1222245..1223648 (+) 1404 WP_262538811.1 ATP-dependent protease ATPase subunit HslU -
  MUA59_RS05930 (MUA59_05915) codY 1223673..1224446 (+) 774 WP_262536783.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MUA59_RS05935 (MUA59_05920) - 1224497..1224589 (+) 93 WP_031788481.1 hypothetical protein -
  MUA59_RS05940 (MUA59_05925) rpsB 1224788..1225555 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  MUA59_RS05945 (MUA59_05930) - 1225589..1225702 (+) 114 WP_001789890.1 hypothetical protein -
  MUA59_RS05950 (MUA59_05935) tsf 1225737..1226618 (+) 882 WP_000201387.1 translation elongation factor Ts -
  MUA59_RS05955 (MUA59_05940) pyrH 1226755..1227477 (+) 723 WP_000057330.1 UMP kinase -
  MUA59_RS05960 (MUA59_05945) frr 1227496..1228050 (+) 555 WP_001280006.1 ribosome recycling factor -
  MUA59_RS05965 (MUA59_05950) - 1228423..1229193 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28729.09 Da        Isoelectric Point: 6.2606

>NTDB_id=579664 MUA59_RS05930 WP_262536783.1 1223673..1224446(+) (codY) [Staphylococcus aureus strain IVB6172]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEHTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=579664 MUA59_RS05930 WP_262536783.1 1223673..1224446(+) (codY) [Staphylococcus aureus strain IVB6172]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAACATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424