Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HU749_RS25530 Genome accession   NZ_CP077086
Coordinates   5778821..5780167 (+) Length   448 a.a.
NCBI ID   WP_186652560.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5773821..5785167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS25505 (HU749_025505) pgeF 5774036..5774761 (-) 726 WP_186652557.1 peptidoglycan editing factor PgeF -
  HU749_RS25510 (HU749_025510) rluD 5774758..5775720 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HU749_RS25515 (HU749_025515) - 5775871..5776887 (+) 1017 WP_186652558.1 outer membrane protein assembly factor BamD -
  HU749_RS25520 (HU749_025520) - 5777012..5777245 (+) 234 WP_186652559.1 PP0621 family protein -
  HU749_RS25525 (HU749_025525) pilS 5777235..5778824 (+) 1590 WP_095963042.1 two-component system sensor histidine kinase NtrB Regulator
  HU749_RS25530 (HU749_025530) pilR 5778821..5780167 (+) 1347 WP_186652560.1 sigma-54-dependent transcriptional regulator Regulator
  HU749_RS25535 (HU749_025535) - 5780250..5780615 (-) 366 WP_186652561.1 DUF6124 family protein -
  HU749_RS25540 (HU749_025540) - 5781084..5781248 (+) 165 WP_217870589.1 hypothetical protein -
  HU749_RS25545 (HU749_025545) - 5781633..5781797 (-) 165 WP_217870591.1 hypothetical protein -
  HU749_RS25550 (HU749_025550) thiO 5781980..5783080 (-) 1101 WP_079302681.1 glycine oxidase ThiO -
  HU749_RS25555 (HU749_025555) - 5783139..5783540 (-) 402 WP_046065049.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50028.42 Da        Isoelectric Point: 5.7712

>NTDB_id=578974 HU749_RS25530 WP_186652560.1 5778821..5780167(+) (pilR) [Pseudomonas ogarae strain SWRI108]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANLGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=578974 HU749_RS25530 WP_186652560.1 5778821..5780167(+) (pilR) [Pseudomonas ogarae strain SWRI108]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAGGCCCTGCTGGCCGGGGATGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGTTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGTCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACCACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCGCCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGTCCCCGTGCCAA
CCTGGGCTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCTTGGCGATGCAGGTCAAGCTGCTGCGAGCAATCCAGGAAAAAGCCGTACGCGCTGTTGGCGGCCAGCAGGA
AGAAGTGGTGGACGTACGCATCCTCTGTGCGACTCACAAGGACCTGGACGGCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTCCCACCGTTGCGCGAACGCCGTGAAGACATCGAGCTGCTGGCC
AACCATATGCTCCAGCGTCTGGCGGCCAACACCGGCAGCCCACCGGTCAGATTGCATCCCCAGGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TCGAAGCGGATGACCTGCGCTTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCATTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAACGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.604

99.107

0.779
  pilR Acinetobacter baumannii strain A118

50.327

100

0.516