Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG18_RS00830 Genome accession   NZ_CP094165
Coordinates   174547..174810 (+) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169547..179810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS00800 (MPG18_00800) - 169556..171369 (+) 1814 Protein_154 hypothetical protein -
  MPG18_RS00805 (MPG18_00805) - 171808..172068 (+) 261 WP_213209156.1 type VII secretion protein -
  MPG18_RS00810 (MPG18_00810) - 172078..172901 (+) 824 Protein_156 5-amino-6-(5-phosphoribosylamino)uracil reductase -
  MPG18_RS00815 (MPG18_00815) - 172884..173672 (+) 789 WP_245078677.1 integrase -
  MPG18_RS00820 (MPG18_00820) - 173776..174255 (+) 480 WP_245078131.1 hypothetical protein -
  MPG18_RS00825 (MPG18_00825) comB2 174252..174536 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG18_RS00830 (MPG18_00830) comB3 174547..174810 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG18_RS00835 (MPG18_00835) - 174821..175057 (+) 237 WP_245078133.1 hypothetical protein -
  MPG18_RS00840 (MPG18_00840) comB4 175057..177633 (+) 2577 WP_245078135.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG18_RS00845 (MPG18_00845) - 177635..177769 (+) 135 WP_021301032.1 hypothetical protein -
  MPG18_RS00850 (MPG18_00850) - 177762..178934 (+) 1173 WP_245078137.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=576776 MPG18_RS00830 WP_001177712.1 174547..174810(+) (comB3) [Helicobacter pylori strain Hpfe0011]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=576776 MPG18_RS00830 WP_001177712.1 174547..174810(+) (comB3) [Helicobacter pylori strain Hpfe0011]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598