Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG18_RS00825 Genome accession   NZ_CP094165
Coordinates   174252..174536 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe0011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169252..179536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG18_RS00800 (MPG18_00800) - 169556..171369 (+) 1814 Protein_154 hypothetical protein -
  MPG18_RS00805 (MPG18_00805) - 171808..172068 (+) 261 WP_213209156.1 type VII secretion protein -
  MPG18_RS00810 (MPG18_00810) - 172078..172901 (+) 824 Protein_156 5-amino-6-(5-phosphoribosylamino)uracil reductase -
  MPG18_RS00815 (MPG18_00815) - 172884..173672 (+) 789 WP_245078677.1 integrase -
  MPG18_RS00820 (MPG18_00820) - 173776..174255 (+) 480 WP_245078131.1 hypothetical protein -
  MPG18_RS00825 (MPG18_00825) comB2 174252..174536 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPG18_RS00830 (MPG18_00830) comB3 174547..174810 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPG18_RS00835 (MPG18_00835) - 174821..175057 (+) 237 WP_245078133.1 hypothetical protein -
  MPG18_RS00840 (MPG18_00840) comB4 175057..177633 (+) 2577 WP_245078135.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG18_RS00845 (MPG18_00845) - 177635..177769 (+) 135 WP_021301032.1 hypothetical protein -
  MPG18_RS00850 (MPG18_00850) - 177762..178934 (+) 1173 WP_245078137.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=576775 MPG18_RS00825 WP_000736478.1 174252..174536(+) (comB2) [Helicobacter pylori strain Hpfe0011]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=576775 MPG18_RS00825 WP_000736478.1 174252..174536(+) (comB2) [Helicobacter pylori strain Hpfe0011]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553