Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG81_RS07640 Genome accession   NZ_CP094151
Coordinates   1598702..1598986 (+) Length   94 a.a.
NCBI ID   WP_245087012.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe019     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593702..1603986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG81_RS07620 (MPG81_07620) - 1594427..1595134 (-) 708 WP_245087008.1 SprT family zinc-dependent metalloprotease -
  MPG81_RS07625 (MPG81_07625) - 1595134..1597851 (-) 2718 Protein_1490 type I restriction endonuclease subunit R -
  MPG81_RS07630 (MPG81_07630) - 1597787..1598122 (+) 336 Protein_1491 integrase -
  MPG81_RS07635 (MPG81_07635) - 1598226..1598705 (+) 480 WP_245087010.1 hypothetical protein -
  MPG81_RS07640 (MPG81_07640) comB2 1598702..1598986 (+) 285 WP_245087012.1 TrbC/VirB2 family protein Machinery gene
  MPG81_RS07645 (MPG81_07645) comB3 1598997..1599260 (+) 264 WP_060760559.1 hypothetical protein Machinery gene
  MPG81_RS07650 (MPG81_07650) - 1599271..1599570 (+) 300 WP_245087014.1 hypothetical protein -
  MPG81_RS07655 (MPG81_07655) comB4 1599467..1602040 (+) 2574 WP_245088405.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG81_RS07660 (MPG81_07660) - 1602037..1602171 (+) 135 WP_245087016.1 type IV secretion system protein VirB7 -
  MPG81_RS07665 (MPG81_07665) - 1602164..1603327 (+) 1164 WP_245087018.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10597.89 Da        Isoelectric Point: 10.9123

>NTDB_id=576475 MPG81_RS07640 WP_245087012.1 1598702..1598986(+) (comB2) [Helicobacter pylori strain Hpfe019]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFILKNLDRWKEILMTVLATAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=576475 MPG81_RS07640 WP_245087012.1 1598702..1598986(+) (comB2) [Helicobacter pylori strain Hpfe019]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATTGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTACTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.044

96.809

0.543