Detailed information NTG0575863

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG50_RS06945
• Genome accession: NZ_CP094134
• Coordinates: 1453941..1455143 (-)
• Length: 400 a.a.
• NCBI ID: WP_245032040.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe048
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1448941..1460143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG50_RS06920 (MPG50_06920)	-	1448956..1449473 (-)	518	Protein_1351	replication regulatory RepB family protein	-
MPG50_RS06925 (MPG50_06925)	-	1449470..1450412 (-)	943	Protein_1352	CpaF/VirB11 family protein	-
MPG50_RS06930 (MPG50_06930)	-	1450417..1450689 (-)	273	WP_245032036.1	hypothetical protein	-
MPG50_RS06935 (MPG50_06935)	-	1450707..1451684 (-)	978	WP_245032038.1	hypothetical protein	-
MPG50_RS06940 (MPG50_06940)	-	1451697..1453957 (-)	2261	Protein_1355	collagen-like protein	-
MPG50_RS06945 (MPG50_06945)	comB10	1453941..1455143 (-)	1203	WP_245032040.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG50_RS06950 (MPG50_06950)	-	1455140..1456810 (-)	1671	WP_245032042.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG50_RS06955 (MPG50_06955)	-	1456807..1457976 (-)	1170	WP_180519005.1	VirB8/TrbF family protein	-
MPG50_RS06960 (MPG50_06960)	-	1457969..1458103 (-)	135	WP_000738749.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44889.67 Da
• Isoelectric Point: 9.9018

>NTDB_id=575863 MPG50_RS06945 WP_245032040.1 1453941..1455143(-) (comB10) [Helicobacter pylori strain Hpfe048]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQNDTITHLQQVLQSPPKMKPKLKHIKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNDNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNWLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFIAPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=575863 MPG50_RS06945 WP_245032040.1 1453941..1455143(-) (comB10) [Helicobacter pylori strain Hpfe048]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATATTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACGATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATTGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTGCCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.672	98.25	0.518