Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   KPF78_RS03725 Genome accession   NZ_CP076503
Coordinates   729842..730579 (-) Length   245 a.a.
NCBI ID   WP_002780246.1    Uniprot ID   A0A5T1L8T6
Organism   Campylobacter coli strain R19.0895     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 724842..735579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF78_RS03685 (KPF78_03685) - 724955..725716 (+) 762 WP_072212081.1 ATP-binding protein -
  KPF78_RS03690 (KPF78_03690) - 725713..726396 (+) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  KPF78_RS03695 (KPF78_03695) thiD 726396..727208 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KPF78_RS03700 (KPF78_03700) thiE 727198..727830 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  KPF78_RS03705 (KPF78_03705) - 727808..728437 (+) 630 WP_060808047.1 uroporphyrinogen-III synthase -
  KPF78_RS03710 (KPF78_03710) - 728430..728882 (-) 453 WP_002777117.1 hypothetical protein -
  KPF78_RS03715 (KPF78_03715) - 728879..729547 (-) 669 WP_002780245.1 hypothetical protein -
  KPF78_RS03720 (KPF78_03720) - 729540..729845 (-) 306 WP_002790525.1 hypothetical protein -
  KPF78_RS03725 (KPF78_03725) proC 729842..730579 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  KPF78_RS03730 (KPF78_03730) fliW 730579..730968 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  KPF78_RS03735 (KPF78_03735) - 731132..731779 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  KPF78_RS03740 (KPF78_03740) lon 731795..734170 (+) 2376 WP_002783351.1 endopeptidase La -
  KPF78_RS03745 (KPF78_03745) rpsR 734226..734486 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  KPF78_RS03750 (KPF78_03750) - 734497..735045 (-) 549 WP_002777084.1 single-stranded DNA-binding protein -
  KPF78_RS03755 (KPF78_03755) rpsF 735054..735431 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26797.20 Da        Isoelectric Point: 9.3032

>NTDB_id=575829 KPF78_RS03725 WP_002780246.1 729842..730579(-) (proC) [Campylobacter coli strain R19.0895]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=575829 KPF78_RS03725 WP_002780246.1 729842..730579(-) (proC) [Campylobacter coli strain R19.0895]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAGGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCGATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1L8T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

80.833

97.959

0.792