Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG57_RS01535 Genome accession   NZ_CP094132
Coordinates   298396..299445 (-) Length   349 a.a.
NCBI ID   WP_245081361.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe051     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 293396..304445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG57_RS01515 (MPG57_01515) rpsL 294442..294849 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG57_RS01520 (MPG57_01520) rpsG 294865..295332 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  MPG57_RS01525 (MPG57_01525) fusA 295344..297422 (+) 2079 WP_000101840.1 elongation factor G -
  MPG57_RS01530 (MPG57_01530) - 297984..298202 (+) 219 WP_000744171.1 hypothetical protein -
  MPG57_RS01535 (MPG57_01535) waaF 298396..299445 (-) 1050 WP_245081361.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG57_RS01540 (MPG57_01540) hisS 299507..300835 (+) 1329 WP_245081362.1 histidine--tRNA ligase -
  MPG57_RS01545 (MPG57_01545) asd 300822..301862 (+) 1041 WP_245081363.1 aspartate-semialdehyde dehydrogenase -
  MPG57_RS01550 (MPG57_01550) - 302293..303474 (+) 1182 WP_245081364.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39543.38 Da        Isoelectric Point: 9.9154

>NTDB_id=575757 MPG57_RS01535 WP_245081361.1 298396..299445(-) (waaF) [Helicobacter pylori strain Hpfe051]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLKKELDRKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPTSHYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKSIKGLLKNPLLFN
NAYNLCGKTSIKELIERIATLDLFITNDSGPMHVAAGAQTPLIALFGPTDEKETHPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575757 MPG57_RS01535 WP_245081361.1 298396..299445(-) (waaF) [Helicobacter pylori strain Hpfe051]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTCTTTCGTTCTTTGTTCCTAAGCCATGCGATAATGGCTGCCCCCAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTCATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATCTTAAAATCCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGTGGGAAAACAAGCATTAAAGAATTGATAGAGCGTATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTGGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCACCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361