Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPF99_RS02855 Genome accession   NZ_CP094130
Coordinates   587570..587854 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe053     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582570..592854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF99_RS02830 (MPF99_02830) - 583168..584339 (-) 1172 Protein_549 VirB8/TrbF family protein -
  MPF99_RS02835 (MPF99_02835) - 584332..584466 (-) 135 WP_000738749.1 hypothetical protein -
  MPF99_RS02840 (MPF99_02840) - 584463..587049 (-) 2587 Protein_551 VirB4 family type IV secretion/conjugal transfer ATPase -
  MPF99_RS02845 (MPF99_02845) - 587049..587285 (-) 237 WP_180393538.1 hypothetical protein -
  MPF99_RS02850 (MPF99_02850) comB3 587296..587559 (-) 264 WP_001177712.1 hypothetical protein Machinery gene
  MPF99_RS02855 (MPF99_02855) comB2 587570..587854 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  MPF99_RS02860 (MPF99_02860) - 587851..588330 (-) 480 WP_180581726.1 hypothetical protein -
  MPF99_RS02865 (MPF99_02865) - 588434..589222 (-) 789 Protein_556 integrase -
  MPF99_RS02870 (MPF99_02870) - 589275..589811 (-) 537 Protein_557 site-specific DNA-methyltransferase -
  MPF99_RS02875 (MPF99_02875) - 589805..592288 (-) 2484 WP_245059342.1 DEAD/DEAH box helicase family protein -
  MPF99_RS02880 (MPF99_02880) - 592309..592449 (-) 141 WP_245059344.1 type III restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=575684 MPF99_RS02855 WP_000736478.1 587570..587854(-) (comB2) [Helicobacter pylori strain Hpfe053]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=575684 MPF99_RS02855 WP_000736478.1 587570..587854(-) (comB2) [Helicobacter pylori strain Hpfe053]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553