Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG73_RS05555 Genome accession   NZ_CP094122
Coordinates   1158921..1160846 (+) Length   641 a.a.
NCBI ID   WP_245056758.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153921..1165846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS05530 (MPG73_05530) hofB 1154120..1155559 (-) 1440 WP_245056755.1 outer membrane beta-barrel protein HofB -
  MPG73_RS05535 (MPG73_05535) pyrB 1155854..1156777 (-) 924 WP_245056756.1 aspartate carbamoyltransferase -
  MPG73_RS05540 (MPG73_05540) - 1156844..1157359 (+) 516 WP_000523557.1 hypothetical protein -
  MPG73_RS05545 (MPG73_05545) - 1157359..1158066 (+) 708 WP_245056757.1 TlyA family RNA methyltransferase -
  MPG73_RS05550 (MPG73_05550) - 1158032..1158874 (+) 843 WP_000931624.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG73_RS05555 (MPG73_05555) recP/tkt 1158921..1160846 (+) 1926 WP_245056758.1 transketolase Machinery gene
  MPG73_RS05560 (MPG73_05560) - 1160843..1163179 (+) 2337 WP_245056759.1 PD-(D/E)XK nuclease family protein -
  MPG73_RS05565 (MPG73_05565) - 1163176..1165704 (+) 2529 WP_245056760.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70535.74 Da        Isoelectric Point: 6.5396

>NTDB_id=575491 MPG73_RS05555 WP_245056758.1 1158921..1160846(+) (recP/tkt) [Helicobacter pylori strain Hpfe058]
MQLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKIKALFIFTHDSIGVGEDGATHQPIEQLSHLRTLPNFYAFRPS
DAFENTACMQIALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALESAKRLERENIPT
QVVSVPCFDLLIEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLH
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=575491 MPG73_RS05555 WP_245056758.1 1158921..1160846(+) (recP/tkt) [Helicobacter pylori strain Hpfe058]
ATGCAATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGAGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCTTGGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGTATTGAAATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGATAAAGAAGCCATTTCTCATAAAGTTTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTCAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCACGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGATCACCCCTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAACCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGGGGGAGCGCGGATTTAGCCCCCT
CTAATAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGTGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGTGCTTTAATGAAAATAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAGCCTATAGAGCAATTGAGCCATTTACGCACTTTGCCCAATTTCTACGCTTTCAGACCCAGC
GATGCTTTTGAAAATACCGCTTGCATGCAAATAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAATATGATGCTAAAAACCCCGTTA
TCACGCTGGTTGCGAGCGGGAGCGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAAGGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGTGCCTTGCTTTGATTTATTGATAGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
TTTAGTGATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCCAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418