Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KOM03_RS16940 Genome accession   NZ_CP076450
Coordinates   3487160..3487495 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482160..3492495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS16920 (KOM03_16920) gcvT 3482770..3483870 (-) 1101 WP_015388009.1 glycine cleavage system aminomethyltransferase GcvT -
  KOM03_RS16925 (KOM03_16925) - 3484294..3485964 (+) 1671 WP_060562612.1 SNF2-related protein -
  KOM03_RS16930 (KOM03_16930) - 3485982..3486776 (+) 795 WP_060562613.1 YqhG family protein -
  KOM03_RS16935 (KOM03_16935) sinI 3486953..3487126 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KOM03_RS16940 (KOM03_16940) sinR 3487160..3487495 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KOM03_RS16945 (KOM03_16945) tasA 3487543..3488328 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KOM03_RS16950 (KOM03_16950) sipW 3488392..3488976 (-) 585 WP_060562614.1 signal peptidase I SipW -
  KOM03_RS16955 (KOM03_16955) tapA 3488948..3489619 (-) 672 WP_060562615.1 amyloid fiber anchoring/assembly protein TapA -
  KOM03_RS16960 (KOM03_16960) - 3489878..3490207 (+) 330 WP_060562616.1 DUF3889 domain-containing protein -
  KOM03_RS16965 (KOM03_16965) - 3490247..3490426 (-) 180 WP_003153093.1 YqzE family protein -
  KOM03_RS16970 (KOM03_16970) comGG 3490483..3490860 (-) 378 WP_060562617.1 competence type IV pilus minor pilin ComGG Machinery gene
  KOM03_RS16975 (KOM03_16975) comGF 3490861..3491361 (-) 501 WP_014305411.1 competence type IV pilus minor pilin ComGF -
  KOM03_RS16980 (KOM03_16980) comGE 3491270..3491584 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  KOM03_RS16985 (KOM03_16985) comGD 3491568..3492005 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  KOM03_RS16990 (KOM03_16990) comGC 3491995..3492303 (-) 309 WP_079891096.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=575491 KOM03_RS16940 WP_003153104.1 3487160..3487495(+) (sinR) [Bacillus velezensis strain GMEKP1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=575491 KOM03_RS16940 WP_003153104.1 3487160..3487495(+) (sinR) [Bacillus velezensis strain GMEKP1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991