Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG73_RS01550 Genome accession   NZ_CP094122
Coordinates   295719..296768 (-) Length   349 a.a.
NCBI ID   WP_245057349.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 290719..301768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS01530 (MPG73_01530) rpsL 291807..292214 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG73_RS01535 (MPG73_01535) rpsG 292230..292697 (+) 468 WP_154418892.1 30S ribosomal protein S7 -
  MPG73_RS01540 (MPG73_01540) fusA 292709..294787 (+) 2079 WP_000101843.1 elongation factor G -
  MPG73_RS01545 (MPG73_01545) - 295314..295532 (+) 219 WP_000744170.1 hypothetical protein -
  MPG73_RS01550 (MPG73_01550) waaF 295719..296768 (-) 1050 WP_245057349.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG73_RS01555 (MPG73_01555) hisS 296830..298158 (+) 1329 WP_245057351.1 histidine--tRNA ligase -
  MPG73_RS01560 (MPG73_01560) asd 298145..299185 (+) 1041 WP_245057353.1 aspartate-semialdehyde dehydrogenase -
  MPG73_RS01565 (MPG73_01565) - 299611..300741 (+) 1131 WP_245057355.1 DUF874 family protein -
  MPG73_RS01570 (MPG73_01570) - 300971..301714 (-) 744 WP_101001045.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39424.31 Da        Isoelectric Point: 9.8036

>NTDB_id=575474 MPG73_RS01550 WP_245057349.1 295719..296768(-) (waaF) [Helicobacter pylori strain Hpfe058]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVCIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPAHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAATLLEKGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLSFN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAASAKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=575474 MPG73_RS01550 WP_245057349.1 295719..296768(-) (waaF) [Helicobacter pylori strain Hpfe058]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATAACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTTGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCGCTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCTGCTACTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATCATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCAAAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.647

97.421

0.367