Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MPG36_RS05275 Genome accession   NZ_CP094099
Coordinates   1102496..1104421 (+) Length   641 a.a.
NCBI ID   WP_245016786.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097496..1109421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG36_RS05250 (MPG36_05250) hofB 1097695..1099136 (-) 1442 Protein_1016 outer membrane beta-barrel protein HofB -
  MPG36_RS05255 (MPG36_05255) pyrB 1099429..1100352 (-) 924 WP_245016784.1 aspartate carbamoyltransferase -
  MPG36_RS05260 (MPG36_05260) - 1100419..1100934 (+) 516 WP_000523557.1 hypothetical protein -
  MPG36_RS05265 (MPG36_05265) - 1100934..1101641 (+) 708 WP_245016785.1 TlyA family RNA methyltransferase -
  MPG36_RS05270 (MPG36_05270) - 1101607..1102449 (+) 843 WP_001919375.1 bifunctional riboflavin kinase/FAD synthetase -
  MPG36_RS05275 (MPG36_05275) recP/tkt 1102496..1104421 (+) 1926 WP_245016786.1 transketolase Machinery gene
  MPG36_RS05280 (MPG36_05280) - 1104418..1106754 (+) 2337 WP_245016787.1 PD-(D/E)XK nuclease family protein -
  MPG36_RS05285 (MPG36_05285) - 1106751..1109303 (+) 2553 WP_245016788.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70397.59 Da        Isoelectric Point: 6.4662

>NTDB_id=574844 MPG36_RS05275 WP_245016786.1 1102496..1104421(+) (recP/tkt) [Helicobacter pylori strain Hpfe080]
MQLSNTDLERLKSMANTLRFLCADMIDRANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHLNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMYFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKGFDFSAINYPVFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPVITLVASGSEVSLALEGAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=574844 MPG36_RS05275 WP_245016786.1 1102496..1104421(+) (recP/tkt) [Helicobacter pylori strain Hpfe080]
ATGCAATTGAGTAACACTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTTCGCTTTTTGTGCGCGGACATGATAGA
TAGGGCCAATAGCGGGCATCCGGGCGTTTGCTTGGGATTAGCTGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACTAACCCTAAATGGCTTAATAGAGATAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTATGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTCAGCGAACAGGTCAAGATGCGGTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAGCAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATTATTAGCCCAAAAAACAAAA
TGTATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGGTTTTGATTTTAGCGCCATCAATTACCCCGTTTTCAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAATGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGAGGAAGTGCGGATTTAGCCCCGT
CTAATAACACGCAGTTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCTCTTTTTATTTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCTAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTAGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGTTA
TCACATTGGTTGCGAGCGGGAGTGAAGTTTCTTTGGCTTTAGAGGGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAAGT
CTTAGTCATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-320)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.923

100

0.415