Detailed information NTG0574658

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG19_RS00210
• Genome accession: NZ_CP094094
• Coordinates: 50547..51782 (+)
• Length: 411 a.a.
• NCBI ID: WP_245066207.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe084
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 45547..56782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG19_RS00195 (MPG19_00195)	-	45960..47894 (+)	1935	WP_245067117.1	type IA DNA topoisomerase	-
MPG19_RS00200 (MPG19_00200)	-	48023..49009 (+)	987	Protein_38	VirB8/TrbF family protein	-
MPG19_RS00205 (MPG19_00205)	-	49009..50550 (+)	1542	WP_245066205.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG19_RS00210 (MPG19_00210)	comB10	50547..51782 (+)	1236	WP_245066207.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG19_RS00215 (MPG19_00215)	-	51852..52145 (+)	294	WP_000671327.1	hypothetical protein	-
MPG19_RS00220 (MPG19_00220)	-	52138..52401 (+)	264	WP_000564647.1	hypothetical protein	-
MPG19_RS00225 (MPG19_00225)	-	52398..52697 (+)	300	WP_245066209.1	hypothetical protein	-
MPG19_RS00230 (MPG19_00230)	-	52697..53638 (+)	942	WP_154547739.1	ATPase, T2SS/T4P/T4SS family	-
MPG19_RS00235 (MPG19_00235)	-	53635..54090 (+)	456	WP_245066211.1	mobilization protein	-
MPG19_RS00240 (MPG19_00240)	-	54087..54377 (+)	291	WP_245066213.1	hypothetical protein	-
MPG19_RS00245 (MPG19_00245)	-	54378..54935 (+)	558	WP_245066215.1	hypothetical protein	-
MPG19_RS00250 (MPG19_00250)	-	54936..56663 (+)	1728	WP_245066217.1	type IV secretory system conjugative DNA transfer family protein	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46444.44 Da
• Isoelectric Point: 9.9480

>NTDB_id=574658 MPG19_RS00210 WP_245066207.1 50547..51782(+) (comB10) [Helicobacter pylori strain Hpfe084]
MKKLLLLLEHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSASNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMNPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNDDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=574658 MPG19_RS00210 WP_245066207.1 50547..51782(+) (comB10) [Helicobacter pylori strain Hpfe084]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGCTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGAACCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATCCTAAGCGATGCTAAGGGGGCTGATGTTAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACTTTGTCAAATGGGCTACTTATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGTTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGAATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACGATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	45.088	96.594	0.436