Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPF97_RS02845 Genome accession   NZ_CP094093
Coordinates   591268..591819 (+) Length   183 a.a.
NCBI ID   WP_245102983.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586268..596819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS02830 (MPF97_02830) cysS 586448..587845 (-) 1398 WP_245102977.1 cysteine--tRNA ligase -
  MPF97_RS02835 (MPF97_02835) murJ 587846..589306 (-) 1461 WP_245102979.1 murein biosynthesis integral membrane protein MurJ -
  MPF97_RS02840 (MPF97_02840) - 589399..591243 (+) 1845 WP_245102981.1 FapA family protein -
  MPF97_RS02845 (MPF97_02845) ruvA 591268..591819 (+) 552 WP_245102983.1 Holliday junction branch migration protein RuvA Machinery gene
  MPF97_RS02850 (MPF97_02850) - 591849..595259 (+) 3411 WP_245102985.1 DUF3519 domain-containing protein -
  MPF97_RS02855 (MPF97_02855) - 595729..596454 (-) 726 WP_000646759.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20226.76 Da        Isoelectric Point: 7.4684

>NTDB_id=574630 MPF97_RS02845 WP_245102983.1 591268..591819(+) (ruvA) [Helicobacter pylori strain Hpfe085]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQVGQKARLKILQVIKEDAHLLYGFLEENEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVQGIGKKLADKIMVDLIGFFIQDETSPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLHS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=574630 MPF97_RS02845 WP_245102983.1 591268..591819(+) (ruvA) [Helicobacter pylori strain Hpfe085]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGTGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAACGAAAAAATTCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCAAGGTATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTGCGCACAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCTTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAACAACTGCACTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-182)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

91.803

100

0.918
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361