Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPF90_RS07860 Genome accession   NZ_CP094090
Coordinates   769474..769734 (-) Length   86 a.a.
NCBI ID   WP_342368794.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe089     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764474..774734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS07815 - 764910..765038 (-) 129 WP_280635639.1 hypothetical protein -
  MPF90_RS03610 (MPF90_03610) - 765038..766969 (-) 1932 WP_245023425.1 type IA DNA topoisomerase -
  MPF90_RS03615 (MPF90_03615) - 766962..769461 (-) 2500 Protein_698 VirB4 family type IV secretion system protein -
  MPF90_RS07860 comB3 769474..769734 (-) 261 WP_342368794.1 virB3 type IV secretion protein Machinery gene
  MPF90_RS03620 (MPF90_03620) - 769735..770037 (-) 303 WP_000649840.1 TrbC/VirB2 family protein -
  MPF90_RS03625 (MPF90_03625) - 770027..771944 (-) 1918 Protein_701 hypothetical protein -
  MPF90_RS03630 (MPF90_03630) - 771954..772718 (-) 765 WP_245023386.1 hypothetical protein -
  MPF90_RS03635 (MPF90_03635) - 772826..773368 (+) 543 WP_245023387.1 glycosyltransferase family 25 protein -
  MPF90_RS03640 (MPF90_03640) - 773310..774095 (+) 786 WP_245023388.1 glycosyltransferase family 25 protein -
  MPF90_RS03645 (MPF90_03645) ppa 774151..774672 (+) 522 WP_245023389.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10169.99 Da        Isoelectric Point: 4.3700

>NTDB_id=574537 MPF90_RS07860 WP_342368794.1 769474..769734(-) (comB3) [Helicobacter pylori strain Hpfe089]
MILNYVETINVREISKKEKFLNLNMNSWIISFLSTSFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574537 MPF90_RS07860 WP_342368794.1 769474..769734(-) (comB3) [Helicobacter pylori strain Hpfe089]
ATGATTTTAAATTATGTAGAGACAATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAATCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCACTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453