Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPG38_RS01675 Genome accession   NZ_CP094080
Coordinates   340071..341120 (-) Length   349 a.a.
NCBI ID   WP_245101391.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 335071..346120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS01650 (MPG38_01650) rpsL 335640..336047 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  MPG38_RS01655 (MPG38_01655) rpsG 336063..336530 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPG38_RS01660 (MPG38_01660) fusA 336542..338620 (+) 2079 WP_245101389.1 elongation factor G -
  MPG38_RS01665 (MPG38_01665) - 339151..339369 (+) 219 WP_245101390.1 flagellar protein -
  MPG38_RS01670 (MPG38_01670) - 339477..339884 (+) 408 WP_245101636.1 flagellar protein -
  MPG38_RS01675 (MPG38_01675) waaF 340071..341120 (-) 1050 WP_245101391.1 lipopolysaccharide heptosyltransferase II Regulator
  MPG38_RS01680 (MPG38_01680) hisS 341182..342510 (+) 1329 WP_180471446.1 histidine--tRNA ligase -
  MPG38_RS01685 (MPG38_01685) asd 342497..343537 (+) 1041 WP_245101392.1 aspartate-semialdehyde dehydrogenase -
  MPG38_RS01690 (MPG38_01690) - 343948..345039 (+) 1092 WP_245101393.1 DUF874 family protein -
  MPG38_RS01695 (MPG38_01695) - 345269..346012 (-) 744 WP_033587001.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39591.50 Da        Isoelectric Point: 9.8133

>NTDB_id=574268 MPG38_RS01675 WP_245101391.1 340071..341120(-) (waaF) [Helicobacter pylori strain Hpfe099]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLNHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETHPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLKKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=574268 MPG38_RS01675 WP_245101391.1 340071..341120(-) (waaF) [Helicobacter pylori strain Hpfe099]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTCAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAACCATGCGGTAATGGCTGCCCCAAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCATCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAAA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364