Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG56_RS02460 Genome accession   NZ_CP094076
Coordinates   499030..499290 (+) Length   86 a.a.
NCBI ID   WP_245044138.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494030..504290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS02435 (MPG56_02435) - 495057..495338 (+) 282 WP_000880314.1 DUF3240 family protein -
  MPG56_RS02440 (MPG56_02440) - 495406..495693 (+) 288 WP_000271454.1 endoribonuclease VapD -
  MPG56_RS02445 (MPG56_02445) - 496042..496806 (+) 765 WP_245044136.1 hypothetical protein -
  MPG56_RS02450 (MPG56_02450) - 496816..498737 (+) 1922 Protein_471 toprim domain-containing protein -
  MPG56_RS02455 (MPG56_02455) - 498727..499029 (+) 303 WP_050850792.1 TrbC/VirB2 family protein -
  MPG56_RS02460 (MPG56_02460) comB3 499030..499290 (+) 261 WP_245044138.1 virB3 type IV secretion protein Machinery gene
  MPG56_RS02465 (MPG56_02465) - 499303..501801 (+) 2499 WP_245044140.1 VirB4 family type IV secretion system protein -
  MPG56_RS02470 (MPG56_02470) - 501794..503728 (+) 1935 WP_245044442.1 type IA DNA topoisomerase -
  MPG56_RS07705 - 503728..503856 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10125.98 Da        Isoelectric Point: 4.6082

>NTDB_id=574147 MPG56_RS02460 WP_245044138.1 499030..499290(+) (comB3) [Helicobacter pylori strain Hpfe102]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLAALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=574147 MPG56_RS02460 WP_245044138.1 499030..499290(+) (comB3) [Helicobacter pylori strain Hpfe102]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGTGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGCGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453