Detailed information NTG0574024

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG62_RS01770
• Genome accession: NZ_CP094071
• Coordinates: 356591..357826 (-)
• Length: 411 a.a.
• NCBI ID: WP_245099622.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe106
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 351591..362826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG62_RS01730 (MPG62_01730)	-	351710..353437 (-)	1728	WP_245099613.1	type IV secretory system conjugative DNA transfer family protein	-
MPG62_RS01735 (MPG62_01735)	-	353438..353995 (-)	558	WP_245099615.1	hypothetical protein	-
MPG62_RS01740 (MPG62_01740)	-	353996..354286 (-)	291	WP_245099617.1	hypothetical protein	-
MPG62_RS01745 (MPG62_01745)	-	354283..354738 (-)	456	WP_231173204.1	mobilization protein	-
MPG62_RS01750 (MPG62_01750)	-	354735..355676 (-)	942	WP_245099618.1	CpaF/VirB11 family protein	-
MPG62_RS01755 (MPG62_01755)	-	355676..355975 (-)	300	WP_000660136.1	hypothetical protein	-
MPG62_RS01760 (MPG62_01760)	-	355972..356235 (-)	264	WP_245099620.1	hypothetical protein	-
MPG62_RS01765 (MPG62_01765)	-	356228..356521 (-)	294	WP_000671329.1	hypothetical protein	-
MPG62_RS01770 (MPG62_01770)	comB10	356591..357826 (-)	1236	WP_245099622.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG62_RS01775 (MPG62_01775)	-	357823..359365 (-)	1543	Protein_345	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG62_RS01780 (MPG62_01780)	-	359365..360351 (-)	987	WP_245099624.1	virB8 family protein	-
MPG62_RS01785 (MPG62_01785)	-	360481..362412 (-)	1932	WP_245100083.1	type IA DNA topoisomerase	-

Sequence

Protein

• Length: 411 a.a.
• Molecular weight: 46400.43 Da
• Isoelectric Point: 10.0008

>NTDB_id=574024 MPG62_RS01770 WP_245099622.1 356591..357826(-) (comB10) [Helicobacter pylori strain Hpfe106]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELKKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRINPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNDDTK

Nucleotide

• Length: 1236 bp

>NTDB_id=574024 MPG62_RS01770 WP_245099622.1 356591..357826(-) (comB10) [Helicobacter pylori strain Hpfe106]
ATGAAAAAACTTCTTTTACTTTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAGCCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGCGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAACCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTAAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAAGGGGCTGATGTTAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACAAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAATCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACGATGATACAAAATAG

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (192-387)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.483	70.56	0.384