Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XCAW_RS05350 Genome accession   NC_020815
Coordinates   1253395..1253514 (+) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri subsp. citri Aw12879     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248395..1258514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCAW_RS05330 (XCAW_01087) - 1248482..1249739 (-) 1258 Protein_1038 type II secretion system F family protein -
  XCAW_RS05335 (XCAW_01088) - 1250096..1250536 (+) 441 WP_015471735.1 pilin -
  XCAW_RS05340 (XCAW_01089) - 1250646..1251101 (+) 456 WP_015463526.1 pilin -
  XCAW_RS05345 (XCAW_01090) pilB 1251165..1252901 (+) 1737 WP_041471193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XCAW_RS05350 pilB 1253395..1253514 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  XCAW_RS05355 - 1253646..1253813 (+) 168 WP_015463523.1 hypothetical protein -
  XCAW_RS05360 (XCAW_01091) pilR 1254036..1255430 (-) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  XCAW_RS05365 (XCAW_01092) - 1255755..1257368 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=57400 XCAW_RS05350 WP_005915819.1 1253395..1253514(+) (pilB) [Xanthomonas citri subsp. citri Aw12879]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=57400 XCAW_RS05350 WP_005915819.1 1253395..1253514(+) (pilB) [Xanthomonas citri subsp. citri Aw12879]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment