Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPATCC43504_RS02995 Genome accession   NZ_AP017632
Coordinates   605569..606618 (-) Length   349 a.a.
NCBI ID   WP_108169789.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 600569..611618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS02975 (HPATCC43504_00601) rpsG 600864..601331 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  HPATCC43504_RS02980 (HPATCC43504_00602) fusA 601343..603421 (+) 2079 WP_108169788.1 elongation factor G -
  HPATCC43504_RS02985 (HPATCC43504_00603) - 603958..604947 (-) 990 WP_078248051.1 aldo/keto reductase -
  HPATCC43504_RS02990 (HPATCC43504_00604) - 605166..605438 (+) 273 WP_000744165.1 hypothetical protein -
  HPATCC43504_RS02995 (HPATCC43504_00605) waaF 605569..606618 (-) 1050 WP_108169789.1 lipopolysaccharide heptosyltransferase II Regulator
  HPATCC43504_RS03000 (HPATCC43504_00606) hisS 606680..608008 (+) 1329 WP_108169790.1 histidine--tRNA ligase -
  HPATCC43504_RS03005 (HPATCC43504_00607) asd 607995..609035 (+) 1041 WP_108169791.1 aspartate-semialdehyde dehydrogenase -
  HPATCC43504_RS03010 (HPATCC43504_00608) - 609447..610685 (+) 1239 WP_108169792.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39510.21 Da        Isoelectric Point: 9.6394

>NTDB_id=57400 HPATCC43504_RS02995 WP_108169789.1 605569..606618(-) (waaF) [Helicobacter pylori strain ATCC 43504]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAARTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=57400 HPATCC43504_RS02995 WP_108169789.1 605569..606618(-) (waaF) [Helicobacter pylori strain ATCC 43504]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGACGACACCAAAAAATCCTTTTTCAGGCTGTTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTCATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.135

97.994

0.364

Multiple sequence alignment