Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPATCC43504_RS00575 Genome accession   NZ_AP017632
Coordinates   131735..132019 (-) Length   94 a.a.
NCBI ID   WP_064432016.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126735..137019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS00555 (HPATCC43504_00117) - 126918..130496 (-) 3579 WP_331837386.1 SNF2-related protein -
  HPATCC43504_RS08335 - 130533..131212 (-) 680 Protein_110 transporter -
  HPATCC43504_RS00565 (HPATCC43504_00118) - 131212..131448 (-) 237 WP_001168532.1 hypothetical protein -
  HPATCC43504_RS00570 (HPATCC43504_00119) comB3 131460..131723 (-) 264 WP_001177716.1 hypothetical protein Machinery gene
  HPATCC43504_RS00575 (HPATCC43504_00120) comB2 131735..132019 (-) 285 WP_064432016.1 TrbC/VirB2 family protein Machinery gene
  HPATCC43504_RS00580 (HPATCC43504_00121) - 132016..132495 (-) 480 WP_108169480.1 hypothetical protein -
  HPATCC43504_RS00585 (HPATCC43504_00122) - 132488..132703 (-) 216 WP_108169481.1 hypothetical protein -
  HPATCC43504_RS00590 (HPATCC43504_00123) - 132706..133494 (-) 789 WP_172953003.1 integrase -
  HPATCC43504_RS00595 (HPATCC43504_00124) - 133472..134113 (-) 642 WP_108169483.1 restriction endonuclease subunit S -
  HPATCC43504_RS00600 (HPATCC43504_00125) - 134101..134877 (-) 777 WP_108169484.1 Abi family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10722.08 Da        Isoelectric Point: 11.1589

>NTDB_id=57384 HPATCC43504_RS00575 WP_064432016.1 131735..132019(-) (comB2) [Helicobacter pylori strain ATCC 43504]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMGIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=57384 HPATCC43504_RS00575 WP_064432016.1 131735..132019(-) (comB2) [Helicobacter pylori strain ATCC 43504]
ATGAAAAAATTAAGGCATTTTAGAAAACTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGGGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

58.889

95.745

0.564

Multiple sequence alignment