Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   MPF85_RS05980 Genome accession   NZ_CP094054
Coordinates   1268391..1269440 (+) Length   349 a.a.
NCBI ID   WP_245013362.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263391..1274440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS05965 (MPF85_05965) - 1264286..1265563 (-) 1278 WP_245013359.1 DUF874 family protein -
  MPF85_RS05970 (MPF85_05970) asd 1265974..1267014 (-) 1041 WP_245013360.1 aspartate-semialdehyde dehydrogenase -
  MPF85_RS05975 (MPF85_05975) hisS 1267001..1268329 (-) 1329 WP_245013361.1 histidine--tRNA ligase -
  MPF85_RS05980 (MPF85_05980) waaF 1268391..1269440 (+) 1050 WP_245013362.1 lipopolysaccharide heptosyltransferase II Regulator
  MPF85_RS05985 (MPF85_05985) - 1269629..1269793 (-) 165 WP_000744175.1 hypothetical protein -
  MPF85_RS05990 (MPF85_05990) fusA 1270515..1272593 (-) 2079 WP_245013363.1 elongation factor G -
  MPF85_RS05995 (MPF85_05995) rpsG 1272605..1273072 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  MPF85_RS06000 (MPF85_06000) rpsL 1273088..1273495 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39604.50 Da        Isoelectric Point: 9.8820

>NTDB_id=573558 MPF85_RS05980 WP_245013362.1 1268391..1269440(+) (waaF) [Helicobacter pylori strain Hpfe125]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEERHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAALDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=573558 MPF85_RS05980 WP_245013362.1 1268391..1269440(+) (waaF) [Helicobacter pylori strain Hpfe125]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGACT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCCAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAAGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGCTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361