Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KM400_RS21505 Genome accession   NZ_CP076187
Coordinates   4098268..4099014 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus anthracis str. BF1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4093268..4104014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM400_RS21485 (KM400_21465) dnaG 4094036..4095832 (-) 1797 WP_000528217.1 DNA primase -
  KM400_RS21490 (KM400_21470) - 4096163..4096318 (-) 156 WP_003158471.1 hypothetical protein -
  KM400_RS21495 (KM400_21475) - 4096686..4097498 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  KM400_RS21500 (KM400_21480) - 4097528..4098160 (-) 633 WP_000583758.1 helix-turn-helix transcriptional regulator -
  KM400_RS21505 (KM400_21485) recO 4098268..4099014 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  KM400_RS21510 (KM400_21490) - 4099048..4099191 (-) 144 WP_000883924.1 YqzL family protein -
  KM400_RS21515 (KM400_21495) era 4099368..4100273 (-) 906 WP_001080240.1 GTPase Era -
  KM400_RS21520 (KM400_21500) - 4100266..4100664 (-) 399 WP_001086294.1 cytidine deaminase -
  KM400_RS21525 (KM400_21505) - 4100764..4101117 (-) 354 WP_000715480.1 diacylglycerol kinase family protein -
  KM400_RS21530 (KM400_21510) ybeY 4101114..4101584 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  KM400_RS21535 (KM400_21515) - 4101581..4103725 (-) 2145 WP_000946454.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=573205 KM400_RS21505 WP_000487010.1 4098268..4099014(-) (recO) [Bacillus anthracis str. BF1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=573205 KM400_RS21505 WP_000487010.1 4098268..4099014(-) (recO) [Bacillus anthracis str. BF1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTTTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGACACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGAGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552