Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KME73_RS03390 Genome accession   NZ_CP076099
Coordinates   664507..664815 (+) Length   102 a.a.
NCBI ID   WP_004270901.1    Uniprot ID   A0AAJ0LFY3
Organism   Latilactobacillus curvatus strain SPC-SNU 70-3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 659507..669815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME73_RS03350 (KME73_03350) - 659789..660028 (-) 240 WP_004270892.1 cytochrome b5 domain-containing protein -
  KME73_RS03355 (KME73_03355) - 660223..660558 (+) 336 WP_136903898.1 hypothetical protein -
  KME73_RS03365 (KME73_03365) - 660739..661116 (-) 378 WP_111447553.1 hypothetical protein -
  KME73_RS03370 (KME73_03370) - 661219..661719 (+) 501 WP_215499780.1 VanZ family protein -
  KME73_RS03375 (KME73_03375) - 661809..662540 (+) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KME73_RS03380 (KME73_03380) comGA 662644..663519 (+) 876 WP_111447555.1 competence type IV pilus ATPase ComGA Machinery gene
  KME73_RS03385 (KME73_03385) comGB 663509..664510 (+) 1002 WP_004270906.1 type II secretion system F family protein Machinery gene
  KME73_RS03390 (KME73_03390) comGC 664507..664815 (+) 309 WP_004270901.1 competence type IV pilus major pilin ComGC Machinery gene
  KME73_RS03395 (KME73_03395) - 664847..665239 (+) 393 WP_004270899.1 hypothetical protein -
  KME73_RS03400 (KME73_03400) - 665226..665531 (+) 306 WP_215499782.1 hypothetical protein -
  KME73_RS10050 - 665497..665580 (+) 84 Protein_651 type II secretion system protein -
  KME73_RS03405 (KME73_03405) - 665602..665982 (+) 381 WP_004270914.1 ComGF family competence protein -
  KME73_RS03410 (KME73_03410) - 665960..666283 (+) 324 WP_039099486.1 hypothetical protein -
  KME73_RS03415 (KME73_03415) - 666399..667418 (+) 1020 WP_307722871.1 class I SAM-dependent methyltransferase -
  KME73_RS03420 (KME73_03420) - 667440..668633 (+) 1194 WP_004270911.1 acetate/propionate family kinase -
  KME73_RS03425 (KME73_03425) - 668693..669145 (+) 453 WP_056967146.1 hypothetical protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11238.13 Da        Isoelectric Point: 9.6264

>NTDB_id=571806 KME73_RS03390 WP_004270901.1 664507..664815(+) (comGC) [Latilactobacillus curvatus strain SPC-SNU 70-3]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=571806 KME73_RS03390 WP_004270901.1 664507..664815(+) (comGC) [Latilactobacillus curvatus strain SPC-SNU 70-3]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

60

98.039

0.588