Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MNG38_RS09435 Genome accession   NZ_CP093289
Coordinates   1800265..1800696 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain H2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795265..1805696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS09415 (MNG38_09415) spoVS 1795825..1796085 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MNG38_RS09420 (MNG38_09420) tdh 1796352..1797395 (+) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  MNG38_RS09425 (MNG38_09425) kbl 1797408..1798586 (+) 1179 WP_015252071.1 glycine C-acetyltransferase -
  MNG38_RS09430 (MNG38_09430) miaB 1798734..1800263 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MNG38_RS09435 (MNG38_09435) ymcA 1800265..1800696 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  MNG38_RS09440 (MNG38_09440) cotE 1800958..1801503 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  MNG38_RS09445 (MNG38_09445) hexA 1801636..1804212 (+) 2577 WP_242139230.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=570910 MNG38_RS09435 WP_003231834.1 1800265..1800696(+) (ymcA) [Bacillus subtilis strain H2]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=570910 MNG38_RS09435 WP_003231834.1 1800265..1800696(+) (ymcA) [Bacillus subtilis strain H2]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1