Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MNG38_RS02795 Genome accession   NZ_CP093289
Coordinates   528375..528809 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 523375..533809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS02765 (MNG38_02765) ydaD 524022..524882 (+) 861 WP_033883707.1 SDR family oxidoreductase -
  MNG38_RS02770 (MNG38_02770) lyxE 524898..525401 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  MNG38_RS02775 (MNG38_02775) ydaF 525489..526040 (+) 552 WP_061891248.1 GNAT family N-acetyltransferase -
  MNG38_RS02780 (MNG38_02780) ydaG 526118..526540 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  MNG38_RS02785 (MNG38_02785) amj 527046..527855 (+) 810 WP_061891247.1 lipid II flippase Amj -
  MNG38_RS02790 (MNG38_02790) ydzA 527900..528190 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  MNG38_RS02795 (MNG38_02795) lrpC 528375..528809 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  MNG38_RS02800 (MNG38_02800) topB 528874..531057 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  MNG38_RS02805 (MNG38_02805) ephJ 531259..532347 (+) 1089 WP_015252792.1 hypothetical protein -
  MNG38_RS02810 (MNG38_02810) epsK 532328..533179 (+) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=570860 MNG38_RS02795 WP_003246585.1 528375..528809(+) (lrpC) [Bacillus subtilis strain H2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=570860 MNG38_RS02795 WP_003246585.1 528375..528809(+) (lrpC) [Bacillus subtilis strain H2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1