Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MNG38_RS01310 Genome accession   NZ_CP093289
Coordinates   217689..218765 (+) Length   358 a.a.
NCBI ID   WP_214288297.1    Uniprot ID   -
Organism   Bacillus subtilis strain H2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 212689..223765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNG38_RS01285 (MNG38_01285) - 213527..213805 (+) 279 WP_017696800.1 hemolysin XhlA family protein -
  MNG38_RS01290 (MNG38_01290) - 213821..214084 (+) 264 WP_095843439.1 phage holin -
  MNG38_RS01295 (MNG38_01295) - 214136..215110 (+) 975 WP_095843440.1 N-acetylmuramoyl-L-alanine amidase -
  MNG38_RS01300 (MNG38_01300) - 215148..215588 (-) 441 WP_042977637.1 SMI1/KNR4 family protein -
  MNG38_RS01305 (MNG38_01305) - 215601..217421 (-) 1821 WP_128473524.1 T7SS effector LXG polymorphic toxin -
  MNG38_RS01310 (MNG38_01310) rapC 217689..218765 (+) 1077 WP_214288297.1 tetratricopeptide repeat protein Regulator
  MNG38_RS01315 (MNG38_01315) - 218755..218913 (+) 159 WP_164907155.1 hypothetical protein -
  MNG38_RS01320 (MNG38_01320) - 218945..219277 (-) 333 WP_087961654.1 YolD-like family protein -
  MNG38_RS01325 (MNG38_01325) - 219383..219610 (+) 228 WP_087961653.1 hypothetical protein -
  MNG38_RS01330 (MNG38_01330) - 219603..219815 (+) 213 WP_087961652.1 transcriptional regulator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 42418.35 Da        Isoelectric Point: 5.2241

>NTDB_id=570846 MNG38_RS01310 WP_214288297.1 217689..218765(+) (rapC) [Bacillus subtilis strain H2]
MIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTISELLEKIEAPQKKLTGLLK
YYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSMHHILKALEIYDQNPLYTVR
KIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQPSKAEGYLKEAAEVAERANLRTL
PHTLHSLATVLFKQEKFNEGQKVLQQGIETAQKFNDELFLSMNQFLNALYIESVDKQGILNILNHLNESHMFSFTEHITL
LTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=570846 MNG38_RS01310 WP_214288297.1 217689..218765(+) (rapC) [Bacillus subtilis strain H2]
ATGATACGTCAGTTTAGTGTTCCGGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATTAAACAAATGGAAGAGGA
TGAGTATTTACTAATTTATTACTCACTAATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCGGAAAAAAAGT
ATAGAACAGCACGTCCAACCATCTCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAA
TATTACTCACTATTTTTCCGCGGTATGTATGAATTTGATCAGCAAGAATTCGTGGAAGCTATTAACTATTACCGTAAAGC
TGAAAAAGAACTTTATGCTGTTACTGATGAAATCGAACAAGCTGAATTTCATTTTAAGGTGGCAGAAGCTTATTACAACA
TGAAACAAACTCACGTTTCCATGCATCACATTTTAAAGGCATTAGAGATTTATGATCAGAATCCGCTGTATACTGTAAGG
AAAATTCAAAGCTTGTTTGTAATCGTAGGTAACTATCTCGATTTTAAACATTATGAAAAAGGGTTAAAACATCTTGAAGA
AGCCCTGAAGCTTTCTAAGGAATTAGGGCACGACAGACTAATAAGTTCTGCTTTGTATAATTTAGGTGAATGTTATCATT
ACATGGGACAACCAAGTAAAGCTGAAGGATATTTGAAAGAAGCAGCTGAGGTTGCAGAAAGAGCAAATTTAAGGACACTT
CCTCATACGCTCCATTCGTTGGCCACAGTTTTATTCAAGCAGGAAAAGTTTAATGAAGGACAGAAGGTTTTACAGCAAGG
GATCGAAACAGCACAAAAATTCAATGATGAACTTTTCCTATCGATGAATCAGTTTCTGAATGCCCTATATATTGAGTCTG
TTGATAAACAGGGTATCCTCAATATATTGAATCATCTTAATGAAAGTCACATGTTTTCATTTACGGAACACATAACGCTG
CTAACTGCAGAATATTATAGAGAAGGCGGAGAATTTGAAGAATCCAGTTTTTTCTATGATAAAATGGTTGAAGCGCAGCT
TCAAATTCAGCGAGGTGACTGTTTATATGAGTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-46)

Tetratricopeptide repeat (TPR_12)

(178-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.458

100

0.425
  rapF Bacillus subtilis subsp. subtilis str. 168

39.665

100

0.397