Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MMZ68_RS09545 Genome accession   NZ_CP093028
Coordinates   2017093..2017422 (+) Length   109 a.a.
NCBI ID   WP_019485985.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H05     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2012093..2022422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ68_RS09530 (MMZ68_09530) - 2012822..2013766 (+) 945 WP_023093915.1 NAD-dependent epimerase/dehydratase family protein -
  MMZ68_RS09535 (MMZ68_09535) - 2013867..2014892 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  MMZ68_RS09540 (MMZ68_09540) - 2014905..2016902 (+) 1998 WP_034057296.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MMZ68_RS09545 (MMZ68_09545) comEA/comE1 2017093..2017422 (+) 330 WP_019485985.1 ComEA family DNA-binding protein Machinery gene
  MMZ68_RS09555 (MMZ68_09555) - 2017639..2018835 (-) 1197 WP_019485986.1 amino acid aminotransferase -
  MMZ68_RS09560 (MMZ68_09560) uvrB 2019023..2021035 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11325.23 Da        Isoelectric Point: 8.0459

>NTDB_id=569960 MMZ68_RS09545 WP_019485985.1 2017093..2017422(+) (comEA/comE1) [Pseudomonas aeruginosa strain H05]
MHLIKSALLLILFACLPFSASAAPVAVAKNPAAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=569960 MMZ68_RS09545 WP_019485985.1 2017093..2017422(+) (comEA/comE1) [Pseudomonas aeruginosa strain H05]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGGCGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385