Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ATE38_RS05530 Genome accession   NZ_AP017377
Coordinates   1095991..1096593 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain OC8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090991..1101593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS05490 - 1091074..1091193 (+) 120 WP_000840602.1 hypothetical protein -
  ATE38_RS05495 mreC 1091393..1092235 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  ATE38_RS05500 mreD 1092235..1092765 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  ATE38_RS05505 rplU 1092932..1093240 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ATE38_RS05510 - 1093246..1093566 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ATE38_RS05515 rpmA 1093578..1093862 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  ATE38_RS05520 obgE 1094217..1095509 (+) 1293 WP_000496100.1 GTPase ObgE -
  ATE38_RS05525 - 1095522..1095977 (+) 456 WP_000368902.1 ACT domain-containing protein -
  ATE38_RS05530 ruvA 1095991..1096593 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  ATE38_RS05535 ruvB 1096625..1097629 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ATE38_RS05540 queA 1097631..1098656 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ATE38_RS05545 tgt 1098679..1099818 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  ATE38_RS05550 yajC 1099837..1100097 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=56978 ATE38_RS05530 WP_000271547.1 1095991..1096593(+) (ruvA) [Staphylococcus aureus strain OC8]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=56978 ATE38_RS05530 WP_000271547.1 1095991..1096593(+) (ruvA) [Staphylococcus aureus strain OC8]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment