Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MK801_RS09115 Genome accession   NZ_CP092748
Coordinates   1815524..1816165 (+) Length   213 a.a.
NCBI ID   WP_003131746.1    Uniprot ID   Q9CI22
Organism   Lactococcus lactis strain 17M1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810524..1821165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS09085 (MK801_09080) - 1811684..1811875 (-) 192 WP_003131739.1 DNA-directed RNA polymerase subunit beta -
  MK801_RS09090 (MK801_09085) murA 1811875..1813161 (-) 1287 WP_033900539.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MK801_RS09095 (MK801_09090) - 1813255..1814034 (-) 780 WP_057719635.1 inositol monophosphatase family protein -
  MK801_RS09100 (MK801_09095) - 1814000..1814281 (-) 282 WP_057719636.1 UPF0223 family protein -
  MK801_RS09105 (MK801_09100) spx 1814373..1814759 (-) 387 WP_010905435.1 transcriptional regulator Spx -
  MK801_RS09110 (MK801_09105) - 1814919..1815443 (-) 525 WP_010905434.1 DUF1273 domain-containing protein -
  MK801_RS09115 (MK801_09110) recU 1815524..1816165 (+) 642 WP_003131746.1 Holliday junction resolvase RecU Machinery gene
  MK801_RS09120 (MK801_09115) - 1816233..1818245 (+) 2013 WP_042230694.1 transglycosylase domain-containing protein -
  MK801_RS09125 (MK801_09120) - 1818246..1818878 (+) 633 WP_057719637.1 MBL fold metallo-hydrolase -
  MK801_RS09130 (MK801_09125) - 1818918..1820003 (-) 1086 WP_057719638.1 LysM peptidoglycan-binding domain-containing protein -
  MK801_RS09135 (MK801_09130) cysK 1820221..1821153 (+) 933 WP_003131750.1 cysteine synthase A -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24369.13 Da        Isoelectric Point: 10.1344

>NTDB_id=568061 MK801_RS09115 WP_003131746.1 1815524..1816165(+) (recU) [Lactococcus lactis strain 17M1]
MVNYPNGRSRAYSTVPKKKKSLTELSVTKKSTSKTKGMVAFGKRGMNFEAEINATNEYYLSRGLAVIHKKPTPIQIVKVD
YPQRSRAKITEAYFRQASTTDYSGVYKGHYIDFEAKETQQKTVFPLKNFHEHQIVHMSNVLAQGGIAFVLLHFARLNETY
LLPSSCLITFYYEKGGLKSIPLSHIRENGYKIETNHIPRIPYLEIVNKLCEVQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=568061 MK801_RS09115 WP_003131746.1 1815524..1816165(+) (recU) [Lactococcus lactis strain 17M1]
ATGGTTAATTATCCTAATGGAAGGTCGCGAGCTTACAGCACTGTTCCTAAGAAAAAAAAATCACTGACAGAGCTGTCAGT
AACTAAAAAAAGCACCTCAAAAACCAAAGGGATGGTTGCCTTCGGGAAGCGGGGAATGAATTTTGAAGCTGAAATTAATG
CAACAAATGAGTATTATCTTTCTCGTGGACTTGCAGTTATTCACAAAAAGCCAACACCAATTCAAATCGTTAAAGTAGAT
TATCCACAAAGGAGTCGTGCAAAAATTACAGAAGCTTACTTCAGGCAAGCATCTACTACTGACTACTCTGGAGTCTATAA
AGGTCACTACATCGACTTTGAAGCAAAAGAAACACAGCAAAAAACTGTTTTCCCTCTAAAAAATTTCCATGAGCATCAAA
TTGTTCACATGAGTAATGTTCTCGCTCAAGGGGGAATTGCTTTTGTCCTCTTGCACTTTGCAAGGCTAAATGAAACATAT
CTTCTTCCATCTTCGTGTTTGATTACTTTTTATTACGAAAAAGGCGGTTTAAAGTCAATTCCGCTTTCTCATATTCGCGA
AAATGGCTATAAAATTGAAACGAATCACATTCCTAGAATTCCTTATTTAGAAATTGTGAATAAACTTTGTGAGGTACAGT
AA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(44-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CI22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

47.393

99.061

0.469