Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   MK801_RS05835 Genome accession   NZ_CP092748
Coordinates   1133648..1134703 (+) Length   351 a.a.
NCBI ID   WP_254255848.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128648..1139703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS12040 - 1128989..1130645 (-) 1657 Protein_1120 CocE/NonD family hydrolase -
  MK801_RS05820 (MK801_05815) - 1131156..1131473 (+) 318 WP_057720844.1 helix-turn-helix transcriptional regulator -
  MK801_RS05825 (MK801_05820) - 1131470..1132147 (+) 678 WP_057720843.1 type 1 glutamine amidotransferase domain-containing protein -
  MK801_RS05830 (MK801_05825) - 1132148..1133062 (+) 915 WP_057720842.1 NAD-dependent epimerase/dehydratase family protein -
  MK801_RS05835 (MK801_05830) xerS 1133648..1134703 (+) 1056 WP_254255848.1 tyrosine recombinase XerS Machinery gene
  MK801_RS05840 (MK801_05835) - 1134787..1135074 (+) 288 WP_015426413.1 hypothetical protein -
  MK801_RS05845 (MK801_05840) xerS 1135556..1136626 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  MK801_RS05850 (MK801_05845) trmFO 1136671..1138014 (-) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40670.46 Da        Isoelectric Point: 9.7313

>NTDB_id=568042 MK801_RS05835 WP_254255848.1 1133648..1134703(+) (xerS) [Lactococcus lactis strain 17M1]
MSENHGYRYNVNKLMLEFPYYVNEYIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNIHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEQDYEKSISNRARTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHRYITDYFGARSSIETEIQALFITDYNQQIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=568042 MK801_RS05835 WP_254255848.1 1133648..1134703(+) (xerS) [Lactococcus lactis strain 17M1]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTACATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTATTGCCTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATTACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATATACATACATCAGCATTAAATCGAAC
AATTGCTGCAATAAAAAGCCTATATAATTATCTTTGCGAACAAACCGAAGATAGTAATGGCAATACTTACATGACTAGAA
ATGTTAGCCGTTTAATTCATATCCGAAAAAAAAGCGAAACCTTGCATTACCGTGCGGCTCAACTTGAAGGGAAACTCTTT
TTAGGCGATGAAACCAAAGCCTTTTTAGAATTTGTTGAGCAAGACTATGAAAAGTCTATCAGTAATCGTGCAAGAACTAG
TTTCAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTTAACGATTTAAACCTTGAAACTGGTAAAGTAAGAGTGATGCGAAAAGAAGGCAAGAAAGATGTAGTGCCA
ATTGCCCACTTTTCACACAGATATATAACAGATTATTTTGGGGCAAGAAGTAGCATAGAAACTGAAATACAAGCACTTTT
TATTACTGATTACAACCAACAAATTAGAAAAATCTCGAATGCTTCGATAAATAAGCTAGTAGCGAAGTATTCAGAAGCCT
ATAAAGTTCGAGTGACACCTCATACTCTAAGGCATACATTCGCAACAAGACTCTATAACGTCAGTCACTCTCAAGTCCTT
GTCAGCAATCAATTAGGACACTCTTCAACCAAACCAACTGAGTTATATACCCACATTGTCAGCGCTGAAGCTAAAGATGC
ATTAAGAAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(174-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.533

98.86

0.45