Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AVFI_RS02295 Genome accession   NZ_CP092712
Coordinates   478826..480820 (+) Length   664 a.a.
NCBI ID   WP_012534052.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473826..485820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS02270 (AVFI_02270) gshB 474080..475027 (-) 948 WP_017019406.1 glutathione synthase -
  AVFI_RS02275 (AVFI_02275) rsmE 475041..475772 (-) 732 WP_065597616.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AVFI_RS02280 (AVFI_02280) - 475846..476550 (-) 705 WP_011261220.1 endonuclease -
  AVFI_RS02285 (AVFI_02285) - 476642..477142 (-) 501 WP_011261221.1 SprT family zinc-dependent metalloprotease -
  AVFI_RS02290 (AVFI_02290) metK 477307..478461 (-) 1155 WP_005417583.1 methionine adenosyltransferase -
  AVFI_RS02295 (AVFI_02295) recP/tkt 478826..480820 (+) 1995 WP_012534052.1 transketolase Machinery gene
  AVFI_RS02300 (AVFI_02300) epd 480966..481985 (+) 1020 WP_012532906.1 erythrose-4-phosphate dehydrogenase -
  AVFI_RS02305 (AVFI_02305) - 482152..483315 (+) 1164 WP_005417586.1 phosphoglycerate kinase -
  AVFI_RS02310 (AVFI_02310) fbaA 483471..484547 (+) 1077 WP_012533692.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71815.71 Da        Isoelectric Point: 4.6951

>NTDB_id=567933 AVFI_RS02295 WP_012534052.1 478826..480820(+) (recP/tkt) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPQNPEWADRDRFILSNGHGSMLIYSLLHLSGY
DLSIEDLKNFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNGVGMAMAEKALAAQFNREGHDIVDHNTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGEVEGWFSDDTPKRFEAYGWHVIPAVDGHDSDAINAAIEAAKADPRPSLI
CTKTVIGFGSPNKQGTHDCHGAPLGAEEIAATKAQLGWEHGAFEIPADVYGEWDAKEAGSEKEAAWNAKFDAYAAAYPEL
AAEYKRRVNGDLPAEWEEKANAIIADLQANPANIASRKASQNALEAFGAMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKVQNIQVYTHDSIGLGEDGPTHQPVEQIA
SLRLTPNMSTWRPCDQVESAVAWKLAIERKDGPSSLIFSRQNLAQQERTQEQVADIAKGAYILKDCEGQPELILIATGSE
VELAVEAAAQLTAEGKAVRVVSMPSTDAFDKQDEAYREAVLPSAVTKRIAIEAGIADFWYKYVGFGGKIIGMTTFGESAP
ADELFKMFGFTTENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=567933 AVFI_RS02295 WP_012534052.1 478826..480820(+) (recP/tkt) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGTCTTCACGTAAACATCTAGCAAATGCAATCCGCGCTTTAAGCATGGATGGTGTTCAACAAGCAAATTCTGGTCACCC
AGGCGCACCTATGGGTATGGCAGATATCGCTGAAGTATTATGGCGTAGCCACCTAAATCACAACCCACAAAATCCAGAGT
GGGCTGACCGCGACCGTTTTATTCTTTCAAATGGTCATGGCTCTATGCTGATTTATTCTCTGCTTCATCTTTCAGGTTAT
GACCTGTCTATCGAAGACTTAAAGAATTTCCGTCAACTGCATTCTAAAACTCCAGGTCACCCTGAGTATGGTTATGCACC
AGGCGTAGAAACAACTACGGGTCCATTAGGTCAAGGCATCACTAACGGTGTTGGTATGGCGATGGCTGAAAAAGCATTAG
CTGCACAATTTAACCGTGAAGGCCACGATATCGTTGATCACAACACATACGTGTTCATGGGTGACGGTTGTCTAATGGAA
GGTATCTCTCACGAAGCGTGTTCACTTGCTGGTACATTAGGTCTAGGCAAATTAATCGCATTTTGGGATGACAACGGTAT
CTCTATCGATGGTGAAGTTGAAGGTTGGTTCTCTGACGATACACCTAAACGCTTTGAAGCATACGGTTGGCATGTAATTC
CTGCGGTTGATGGCCACGATTCAGATGCTATCAATGCAGCAATTGAAGCGGCTAAAGCTGACCCTCGTCCTTCGTTAATT
TGTACTAAAACAGTAATTGGTTTTGGTTCTCCAAATAAACAAGGTACACACGACTGTCACGGCGCTCCATTAGGTGCTGA
AGAAATTGCAGCAACTAAAGCTCAATTGGGTTGGGAACACGGTGCATTTGAAATTCCTGCAGATGTGTATGGCGAATGGG
ATGCAAAAGAAGCGGGTTCTGAAAAAGAAGCTGCTTGGAATGCAAAATTCGATGCATATGCTGCGGCATACCCTGAATTA
GCGGCAGAATATAAACGTCGTGTAAATGGTGACTTACCTGCAGAATGGGAAGAAAAAGCAAATGCAATTATTGCTGATCT
TCAAGCTAACCCTGCAAACATCGCATCACGTAAAGCATCTCAAAATGCACTAGAAGCGTTTGGTGCTATGCTACCTGAAT
TCATGGGCGGCTCTGCTGACCTTGCACCATCTAACTTAACGATGTGGTCAGGTTCTAAATCTTTAGAAGCAAATGACTTC
TCAGGTAACTACATCCACTACGGTGTGCGTGAATTCGGTATGACAGCAATCATGAATGGTATTGCTTTGCACGGTGGTTT
CGTACCATACGGCGCAACGTTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGCATGGCTGCACTAATGAAAGTGC
AAAACATCCAAGTTTACACGCACGACTCTATCGGTCTTGGTGAAGATGGTCCAACTCACCAACCAGTTGAGCAAATTGCT
TCTCTACGTTTAACACCAAACATGAGCACATGGCGTCCATGTGACCAAGTTGAATCTGCTGTAGCATGGAAACTGGCTAT
CGAGCGTAAAGATGGTCCTTCTTCTTTAATCTTCTCTCGTCAAAACCTTGCACAACAAGAGCGTACACAAGAGCAAGTTG
CAGATATCGCTAAAGGTGCTTACATCCTTAAGGATTGTGAAGGCCAACCTGAGTTGATTCTTATTGCAACAGGTTCAGAA
GTTGAGCTTGCAGTCGAAGCAGCAGCACAACTGACAGCAGAAGGTAAAGCTGTACGTGTTGTTTCAATGCCATCAACAGA
TGCCTTTGATAAACAAGACGAAGCATACCGTGAAGCAGTACTTCCATCAGCGGTAACTAAACGTATCGCAATTGAAGCTG
GCATTGCTGATTTCTGGTACAAGTACGTTGGTTTCGGTGGCAAGATCATCGGTATGACAACATTTGGTGAGTCAGCACCT
GCTGATGAGCTATTCAAAATGTTTGGTTTCACTACTGAAAACGTAGTAAACACGGCGAAAGAACTTTTAGCTTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(544-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.706

98.946

0.482