Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MKR81_RS02415 Genome accession   NZ_CP092682
Coordinates   498366..500375 (+) Length   669 a.a.
NCBI ID   WP_240305003.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 493366..505375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS02390 (MKR81_02390) rsmE 493475..494206 (-) 732 WP_240305001.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  MKR81_RS02395 (MKR81_02395) endA 494353..495048 (-) 696 WP_005425828.1 deoxyribonuclease I -
  MKR81_RS02400 (MKR81_02400) - 495199..495696 (-) 498 WP_240305002.1 SprT family zinc-dependent metalloprotease -
  MKR81_RS02405 (MKR81_02405) - 495764..496561 (-) 798 WP_045371819.1 DUF2189 domain-containing protein -
  MKR81_RS02410 (MKR81_02410) metK 496843..497997 (-) 1155 WP_005425833.1 methionine adenosyltransferase -
  MKR81_RS02415 (MKR81_02415) recP/tkt 498366..500375 (+) 2010 WP_240305003.1 transketolase Machinery gene
  MKR81_RS02420 (MKR81_02420) - 500427..500663 (-) 237 WP_045384536.1 hypothetical protein -
  MKR81_RS02425 (MKR81_02425) epd 500862..501899 (+) 1038 WP_086368969.1 erythrose-4-phosphate dehydrogenase -
  MKR81_RS02430 (MKR81_02430) - 502053..503213 (+) 1161 WP_005436484.1 phosphoglycerate kinase -
  MKR81_RS02435 (MKR81_02435) fbaA 503366..504442 (+) 1077 WP_005531604.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 72499.69 Da        Isoelectric Point: 4.7595

>NTDB_id=567766 MKR81_RS02415 WP_240305003.1 498366..500375(+) (recP/tkt) [Vibrio campbellii strain IFL1]
MSSRNVLSNKELANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLL
HLSGYELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAMAEKALAAQFNKEGHDIVDHFTYVFMGD
GCLMEGISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFESYGWHVIPAVDGHDSEAINAAIIAAKADP
RPTLICTKTIIGFGSPNKAGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGTEKEAAWNAKFEAYAA
AYPAEAAELKRRLNGELPAQWEEKTSQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSL
EANDFSGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQP
VEQMASLRLTPNMSTWRPCDQVESAVAWKLAIERKDGPSALIFSRQNLAQQERTAEQVADIAKGAYILKDSDGKPELILI
ATGSEVELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYRESVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTF
GESAPADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=567766 MKR81_RS02415 WP_240305003.1 498366..500375(+) (recP/tkt) [Vibrio campbellii strain IFL1]
ATGTCTTCTCGTAACGTTCTTTCAAACAAAGAGCTCGCAAATGCAATCCGCGCTCTTAGCATGGATGGTGTTCAACAAGC
TAACTCTGGCCACCCAGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGTTCTCACCTAAACCACAACC
CAGCTAACCCAGAGTGGGCTGACCGCGACCGTTTTGTACTGTCTAACGGCCACGGCTCTATGCTGATTTACTCTCTACTG
CACCTGAGCGGTTACGAGCTGTCTATCGACGATCTTAAGAACTTCCGTCAGCTTCACTCTAAGACTCCTGGTCACCCAGA
GTACGGCTACGCACCAGGTATCGAGACAACGACGGGTCCTCTAGGTCAAGGCATCACTAATGCTGTTGGTATGGCAATGG
CTGAGAAAGCACTAGCGGCTCAGTTCAACAAAGAAGGCCACGACATCGTTGACCACTTCACTTACGTGTTCATGGGCGAT
GGCTGTCTAATGGAAGGTATCTCGCACGAGGCATGTTCTCTTGCTGGTACACTAGGCCTTGGCAAACTGATCGCATTCTG
GGATGACAACGGCATCTCTATCGATGGTCACGTTGAAGGCTGGTTCTCTGATGACACGCCTAAGCGTTTTGAATCTTACG
GTTGGCACGTAATCCCTGCTGTAGATGGTCACGATTCTGAAGCGATCAACGCAGCTATCATCGCTGCGAAAGCAGACCCT
CGTCCAACACTTATCTGTACTAAAACTATCATCGGTTTTGGTTCTCCAAATAAAGCTGGTTCTCACGACTGTCACGGTGC
GCCACTAGGTGCGGAAGAAATCGCAGCAGCGCGTGAATTCCTAGGTTGGGAACACCCAGCATTTGAAATCCCTGCAGACG
TATACGCTGAGTGGGATGCGAAAGCAGCAGGCACTGAGAAAGAAGCGGCTTGGAACGCGAAGTTCGAAGCGTACGCAGCA
GCTTACCCAGCAGAAGCAGCAGAGCTTAAGCGTCGTCTAAACGGCGAACTTCCTGCACAGTGGGAAGAGAAGACAAGCCA
GATCATTGCTGACCTTCAAGCTAACCCAGCAAACATTGCATCACGTAAAGCATCTCAAAACGCACTAGAAGCGTTTGGTC
AAATGCTTCCAGAATTCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACTATGTGGTCTGGTTCTAAGTCTCTA
GAAGCGAACGACTTCTCTGGTAACTACATCCACTACGGTGTACGTGAATTCGGTATGACTGCGATCATGAACGGTATTGC
GCTACACGGCGGTTTCGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTG
CTCTGATGAAAATTCAGAACATCCAAGTTTACACGCATGACTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCA
GTTGAGCAAATGGCATCTCTACGCCTGACTCCAAACATGAGCACATGGCGTCCATGTGACCAAGTTGAGTCTGCAGTAGC
ATGGAAACTAGCGATTGAACGTAAAGATGGCCCGTCGGCACTTATCTTCTCTCGTCAAAACCTAGCACAACAAGAACGTA
CTGCTGAGCAAGTAGCGGACATCGCGAAAGGTGCTTACATCCTGAAAGACAGCGATGGTAAGCCTGAGCTAATCCTAATC
GCGACAGGTTCTGAAGTTGAACTGGCAGTGAAAGCAGCTGAGCAACTAACGGCTGAAGGTAAGAAAGTACGCGTTGTTTC
AATGCCATCAACAGATGCATTCGACAAACAAGACGCGGCTTACCGTGAATCAGTACTGCCATCAGACGTAACTGCACGTA
TCGCTATCGAAGCGGGTATTGCTGACTTCTGGTACAAGTACGTTGGCTTCGACGGTCGCATCATCGGTATGACAACATTC
GGTGAATCTGCACCAGCTGACCAACTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACT
GCTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(9-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-529)

Transketolase, C-terminal domain (Transketolase_C)

(550-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.25

98.206

0.474