Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MID01_RS09025 Genome accession   NZ_CP092369
Coordinates   1741913..1742344 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain ZW     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736913..1747344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS09005 (MID01_09005) spoVS 1737475..1737735 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MID01_RS09010 (MID01_09010) tdh 1738000..1739043 (+) 1044 WP_015715902.1 L-threonine 3-dehydrogenase -
  MID01_RS09015 (MID01_09015) kbl 1739056..1740234 (+) 1179 WP_015715903.1 glycine C-acetyltransferase -
  MID01_RS09020 (MID01_09020) miaB 1740382..1741911 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MID01_RS09025 (MID01_09025) ymcA 1741913..1742344 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  MID01_RS09030 (MID01_09030) cotE 1742606..1743151 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  MID01_RS09035 (MID01_09035) hexA 1743284..1745860 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=565011 MID01_RS09025 WP_003231834.1 1741913..1742344(+) (ymcA) [Bacillus subtilis strain ZW]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=565011 MID01_RS09025 WP_003231834.1 1741913..1742344(+) (ymcA) [Bacillus subtilis strain ZW]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGTTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1