Detailed information NTG0564949

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: MID01_RS01625
• Genome accession: NZ_CP092369
• Coordinates: 295877..296998 (+)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ZW
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 290877..301998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID01_RS01600 (MID01_01600)	ycdA	290885..291949 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
MID01_RS01605 (MID01_01605)	-	291972..292103 (-)	132	WP_003246334.1	hypothetical protein	-
MID01_RS01610 (MID01_01610)	ycdB	292277..293695 (+)	1419	WP_015715198.1	YcdB/YcdC domain-containing protein	-
MID01_RS01615 (MID01_01615)	ycdC	293882..295243 (+)	1362	WP_041520542.1	YcdB/YcdC domain-containing protein	-
MID01_RS01620 (MID01_01620)	cwlK	295251..295754 (-)	504	WP_015715200.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
MID01_RS01625 (MID01_01625)	rapF	295877..296998 (+)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
MID01_RS01630 (MID01_01630)	ycdF	297105..297881 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
MID01_RS01635 (MID01_01635)	ycdG	297906..299591 (+)	1686	WP_015715202.1	alpha-glucosidase	-
MID01_RS01640 (MID01_01640)	znuA	299779..300738 (+)	960	WP_015715203.1	metal ABC transporter substrate-binding protein	-
MID01_RS01645 (MID01_01645)	znuC	300793..301488 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=564949 MID01_RS01625 WP_015715201.1 295877..296998(+) (rapF) [Bacillus subtilis strain ZW]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=564949 MID01_RS01625 WP_015715201.1 295877..296998(+) (rapF) [Bacillus subtilis strain ZW]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGACAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405