Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   MA852_RS05630 Genome accession   NZ_CP092025
Coordinates   1068318..1068623 (+) Length   101 a.a.
NCBI ID   WP_025399042.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063318..1073623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS05605 (MA852_05605) rpsR 1063676..1063936 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  MA852_RS05610 (MA852_05610) lon 1063993..1066368 (-) 2376 WP_057044711.1 endopeptidase La -
  MA852_RS05615 (MA852_05615) - 1066384..1067031 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  MA852_RS05620 (MA852_05620) fliW 1067195..1067584 (+) 390 WP_057044712.1 flagellar assembly protein FliW -
  MA852_RS05625 (MA852_05625) proC 1067584..1068321 (+) 738 WP_025399041.1 pyrroline-5-carboxylate reductase Machinery gene
  MA852_RS05630 (MA852_05630) ctsT 1068318..1068623 (+) 306 WP_025399042.1 hypothetical protein Machinery gene
  MA852_RS05635 (MA852_05635) - 1068616..1069284 (+) 669 WP_238504941.1 hypothetical protein -
  MA852_RS05640 (MA852_05640) - 1069281..1069733 (+) 453 WP_002777117.1 hypothetical protein -
  MA852_RS05645 (MA852_05645) - 1069726..1070355 (-) 630 WP_238504945.1 uroporphyrinogen-III synthase -
  MA852_RS05650 (MA852_05650) thiE 1070333..1070965 (-) 633 WP_057044713.1 thiamine phosphate synthase -
  MA852_RS05655 (MA852_05655) thiD 1070955..1071767 (-) 813 WP_002824851.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MA852_RS05660 (MA852_05660) - 1071767..1072450 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  MA852_RS05665 (MA852_05665) - 1072447..1073208 (-) 762 WP_153887239.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12308.10 Da        Isoelectric Point: 6.0617

>NTDB_id=564328 MA852_RS05630 WP_025399042.1 1068318..1068623(+) (ctsT) [Campylobacter coli strain 14158-6]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=564328 MA852_RS05630 WP_025399042.1 1068318..1068623(+) (ctsT) [Campylobacter coli strain 14158-6]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

47.959

97.03

0.465