Detailed information NTG0563427

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: L6503_RS01685
• Genome accession: NZ_CP091770
• Coordinates: 371087..372289 (-)
• Length: 400 a.a.
• NCBI ID: WP_237775890.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain K115
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366087..377289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6503_RS01660 (L6503_01660)	-	366098..366616 (-)	519	WP_237775888.1	replication regulatory RepB family protein	-
L6503_RS01665 (L6503_01665)	-	366613..367557 (-)	945	WP_006564526.1	CpaF/VirB11 family protein	-
L6503_RS01670 (L6503_01670)	-	367562..367834 (-)	273	WP_000883379.1	hypothetical protein	-
L6503_RS01675 (L6503_01675)	-	367852..368829 (-)	978	WP_121293144.1	hypothetical protein	-
L6503_RS01680 (L6503_01680)	-	368842..371103 (-)	2262	WP_237775889.1	collagen-like protein	-
L6503_RS01685 (L6503_01685)	comB10	371087..372289 (-)	1203	WP_237775890.1	DNA type IV secretion system protein ComB10	Machinery gene
L6503_RS01690 (L6503_01690)	-	372286..373956 (-)	1671	WP_237775891.1	TrbG/VirB9 family P-type conjugative transfer protein	-
L6503_RS01695 (L6503_01695)	-	373953..375122 (-)	1170	WP_237775892.1	VirB8/TrbF family protein	-
L6503_RS01700 (L6503_01700)	-	375250..376095 (-)	846	Protein_334	transporter	-
L6503_RS01705 (L6503_01705)	-	376182..376835 (+)	654	Protein_335	IS607 family transposase	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44782.43 Da
• Isoelectric Point: 9.9727

>NTDB_id=563427 L6503_RS01685 WP_237775890.1 371087..372289(-) (comB10) [Helicobacter pylori strain K115]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFTPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=563427 L6503_RS01685 WP_237775890.1 371087..372289(-) (comB10) [Helicobacter pylori strain K115]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGATTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAACGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTACCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.672	98.25	0.518