Detailed information NTG0561180

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: L3X06_RS10055
• Genome accession: NZ_CP091422
• Coordinates: 2055225..2056319 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain LSM157
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2050225..2061319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3X06_RS10030 (L3X06_10030)	pgsA	2050744..2051283 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L3X06_RS10035 (L3X06_10035)	rodZ	2051293..2052150 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
L3X06_RS10040 (L3X06_10040)	yfmH	2052232..2053515 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
L3X06_RS10045 (L3X06_10045)	yfmF	2053512..2054765 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
L3X06_RS10050 (L3X06_10050)	yaaA	2054839..2055222 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
L3X06_RS10055 (L3X06_10055)	recF	2055225..2056319 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
L3X06_RS10060 (L3X06_10060)	guaB	2056591..2058072 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
L3X06_RS10065 (L3X06_10065)	trpS	2058304..2059329 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
L3X06_RS10070 (L3X06_10070)	-	2059684..2060556 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=561180 L3X06_RS10055 WP_012028050.1 2055225..2056319(+) (recF) [Streptococcus suis strain LSM157]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=561180 L3X06_RS10055 WP_012028050.1 2055225..2056319(+) (recF) [Streptococcus suis strain LSM157]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442