Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KSO_RS00085 Genome accession   NC_020272
Coordinates   16080..16598 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus amyloliquefaciens IT-45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 11080..21598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS00065 (KSO_000075) - 12158..12364 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  KSO_RS00070 (KSO_000080) - 12411..14414 (+) 2004 WP_015387408.1 molybdopterin-dependent oxidoreductase -
  KSO_RS00075 (KSO_000085) ychF 14541..15641 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  KSO_RS00080 (KSO_000090) rpsF 15753..16040 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  KSO_RS00085 (KSO_000095) ssbA 16080..16598 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  KSO_RS00090 (KSO_000100) rpsR 16642..16881 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  KSO_RS00095 (KSO_000105) - 17074..17655 (+) 582 WP_015387409.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  KSO_RS00100 (KSO_000110) - 17652..18209 (+) 558 WP_015387410.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KSO_RS00105 (KSO_000115) xth 18206..18964 (+) 759 WP_015387411.1 exodeoxyribonuclease III -
  KSO_RS00110 (KSO_000120) - 19027..19965 (+) 939 WP_015387412.1 LacI family DNA-binding transcriptional regulator -
  KSO_RS00115 (KSO_000125) - 20023..20403 (+) 381 WP_004392999.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=56069 KSO_RS00085 WP_004392979.1 16080..16598(+) (ssbA) [Bacillus amyloliquefaciens IT-45]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=56069 KSO_RS00085 WP_004392979.1 16080..16598(+) (ssbA) [Bacillus amyloliquefaciens IT-45]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment