Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NCGM1984_RS28605 Genome accession   NZ_AP014646
Coordinates   6132581..6133105 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NCGM1984     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6127581..6138105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCGM1984_RS28590 (NCGM1984_5691) aroB 6128697..6129803 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  NCGM1984_RS28595 (NCGM1984_5692) aroK 6129853..6130371 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NCGM1984_RS28600 (NCGM1984_5693) pilQ 6130383..6132527 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  NCGM1984_RS28605 (NCGM1984_5694) comL/pilP 6132581..6133105 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NCGM1984_RS28610 (NCGM1984_5695) pilO 6133102..6133725 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  NCGM1984_RS28615 (NCGM1984_5696) pilN 6133722..6134318 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NCGM1984_RS28620 (NCGM1984_5697) pilM 6134318..6135382 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NCGM1984_RS28625 (NCGM1984_5698) - 6135567..6138038 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=55888 NCGM1984_RS28605 WP_003095836.1 6132581..6133105(-) (comL/pilP) [Pseudomonas aeruginosa strain NCGM1984]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=55888 NCGM1984_RS28605 WP_003095836.1 6132581..6133105(-) (comL/pilP) [Pseudomonas aeruginosa strain NCGM1984]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment