Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L3X25_RS03175 Genome accession   NZ_CP091310
Coordinates   609665..610213 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain M8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 604665..615213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3X25_RS03150 (L3X25_03150) rseP 604777..605880 (+) 1104 WP_002787897.1 RIP metalloprotease RseP -
  L3X25_RS03155 (L3X25_03155) - 605877..606734 (+) 858 Protein_610 VirK family antimicrobial peptide resistance protein -
  L3X25_RS03160 (L3X25_03160) - 606727..607728 (-) 1002 WP_150966200.1 TIM barrel protein -
  L3X25_RS03165 (L3X25_03165) - 607728..608999 (-) 1272 WP_150966198.1 MFS transporter -
  L3X25_RS03170 (L3X25_03170) rpsF 609279..609656 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  L3X25_RS03175 (L3X25_03175) ssb 609665..610213 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  L3X25_RS03180 (L3X25_03180) rpsR 610224..610484 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  L3X25_RS03185 (L3X25_03185) lon 610540..612915 (-) 2376 WP_002783351.1 endopeptidase La -
  L3X25_RS03190 (L3X25_03190) bamD 612931..613578 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  L3X25_RS03195 (L3X25_03195) fliW 613742..614131 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  L3X25_RS03200 (L3X25_03200) proC 614131..614868 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  L3X25_RS03205 (L3X25_03205) ctsT 614865..615170 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=558330 L3X25_RS03175 WP_002777084.1 609665..610213(+) (ssb) [Campylobacter coli strain M8]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=558330 L3X25_RS03175 WP_002777084.1 609665..610213(+) (ssb) [Campylobacter coli strain M8]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379