Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KCG41_RS01595 | Genome accession | NZ_CP073065 |
| Coordinates | 346399..346824 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934384.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 17Gst354 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 337437..383359 | 346399..346824 | within | 0 |
Gene organization within MGE regions
Location: 337437..383359
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KCG41_RS01485 (KCG41_01485) | - | 337437..338642 (-) | 1206 | WP_000264185.1 | tyrosine-type recombinase/integrase | - |
| KCG41_RS01490 (KCG41_01490) | - | 338752..339366 (+) | 615 | WP_000191459.1 | hypothetical protein | - |
| KCG41_RS01495 (KCG41_01495) | - | 339363..339509 (-) | 147 | WP_001795334.1 | hypothetical protein | - |
| KCG41_RS01500 (KCG41_01500) | - | 339598..339993 (-) | 396 | WP_001558060.1 | hypothetical protein | - |
| KCG41_RS01505 (KCG41_01505) | - | 340021..340455 (-) | 435 | WP_119484249.1 | hypothetical protein | - |
| KCG41_RS01510 (KCG41_01510) | - | 340473..340934 (-) | 462 | WP_212593067.1 | toxin | - |
| KCG41_RS01515 (KCG41_01515) | - | 340947..341261 (-) | 315 | WP_000333630.1 | helix-turn-helix transcriptional regulator | - |
| KCG41_RS01520 (KCG41_01520) | - | 341413..341649 (+) | 237 | WP_001121027.1 | helix-turn-helix transcriptional regulator | - |
| KCG41_RS01525 (KCG41_01525) | - | 341663..342439 (+) | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| KCG41_RS01530 (KCG41_01530) | - | 342468..342617 (+) | 150 | WP_000771849.1 | hypothetical protein | - |
| KCG41_RS01535 (KCG41_01535) | - | 342658..342870 (-) | 213 | WP_000362644.1 | hypothetical protein | - |
| KCG41_RS01540 (KCG41_01540) | - | 342940..343137 (+) | 198 | WP_001148860.1 | hypothetical protein | - |
| KCG41_RS01545 (KCG41_01545) | - | 343124..343504 (-) | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| KCG41_RS01550 (KCG41_01550) | - | 343571..343816 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| KCG41_RS01555 (KCG41_01555) | - | 343785..344150 (-) | 366 | WP_016170627.1 | hypothetical protein | - |
| KCG41_RS01560 (KCG41_01560) | - | 344205..344420 (+) | 216 | WP_001097552.1 | hypothetical protein | - |
| KCG41_RS01565 (KCG41_01565) | - | 344445..344708 (+) | 264 | WP_001124160.1 | helix-turn-helix domain-containing protein | - |
| KCG41_RS01570 (KCG41_01570) | - | 344721..344882 (+) | 162 | WP_000048124.1 | DUF1270 family protein | - |
| KCG41_RS01575 (KCG41_01575) | - | 344985..345287 (+) | 303 | WP_000163429.1 | DUF2482 family protein | - |
| KCG41_RS01580 (KCG41_01580) | - | 345292..345552 (+) | 261 | WP_031886231.1 | DUF1108 family protein | - |
| KCG41_RS01585 (KCG41_01585) | - | 345562..345783 (+) | 222 | WP_000815402.1 | DUF2483 family protein | - |
| KCG41_RS01590 (KCG41_01590) | - | 345776..346399 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| KCG41_RS01595 (KCG41_01595) | ssbA | 346399..346824 (+) | 426 | WP_000934384.1 | single-stranded DNA-binding protein | Machinery gene |
| KCG41_RS01600 (KCG41_01600) | - | 346835..347386 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| KCG41_RS01605 (KCG41_01605) | - | 347387..348061 (+) | 675 | WP_031775800.1 | putative HNHc nuclease | - |
| KCG41_RS01610 (KCG41_01610) | - | 348054..348809 (+) | 756 | WP_001037657.1 | DnaD domain protein | - |
| KCG41_RS01615 (KCG41_01615) | - | 348809..349165 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| KCG41_RS01620 (KCG41_01620) | - | 349162..350403 (+) | 1242 | WP_031775799.1 | DnaB helicase C-terminal domain-containing protein | - |
| KCG41_RS01625 (KCG41_01625) | - | 350400..350615 (+) | 216 | WP_001024404.1 | hypothetical protein | - |
| KCG41_RS01630 (KCG41_01630) | - | 350618..350839 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| KCG41_RS01635 (KCG41_01635) | - | 350849..351253 (+) | 405 | WP_000049784.1 | DUF1064 domain-containing protein | - |
| KCG41_RS01640 (KCG41_01640) | - | 351258..351443 (+) | 186 | WP_001187249.1 | DUF3113 family protein | - |
| KCG41_RS01645 (KCG41_01645) | - | 351444..351815 (+) | 372 | WP_031871590.1 | SA1788 family PVL leukocidin-associated protein | - |
| KCG41_RS01650 (KCG41_01650) | - | 351815..352072 (+) | 258 | WP_031775797.1 | DUF3310 domain-containing protein | - |
| KCG41_RS01655 (KCG41_01655) | - | 352075..352275 (+) | 201 | WP_031837453.1 | hypothetical protein | - |
| KCG41_RS01660 (KCG41_01660) | - | 352284..352532 (+) | 249 | WP_115282697.1 | phi PVL orf 51-like protein | - |
| KCG41_RS01665 (KCG41_01665) | - | 352596..353033 (+) | 438 | WP_031795390.1 | YopX family protein | - |
| KCG41_RS01670 (KCG41_01670) | - | 353030..353395 (+) | 366 | WP_031871592.1 | hypothetical protein | - |
| KCG41_RS01675 (KCG41_01675) | - | 353388..353636 (+) | 249 | WP_016528722.1 | DUF1024 family protein | - |
| KCG41_RS01680 (KCG41_01680) | - | 353629..354165 (+) | 537 | WP_000185680.1 | dUTPase | - |
| KCG41_RS01685 (KCG41_01685) | - | 354202..354375 (+) | 174 | WP_001209216.1 | hypothetical protein | - |
| KCG41_RS01690 (KCG41_01690) | - | 354392..354580 (+) | 189 | WP_000195837.1 | DUF1381 domain-containing protein | - |
| KCG41_RS01695 (KCG41_01695) | - | 354555..354737 (+) | 183 | WP_212593068.1 | hypothetical protein | - |
| KCG41_RS01700 (KCG41_01700) | - | 354790..355416 (+) | 627 | WP_095235717.1 | VapE domain-containing protein | - |
| KCG41_RS01705 (KCG41_01705) | - | 355519..355623 (-) | 105 | WP_015978074.1 | hypothetical protein | - |
| KCG41_RS01710 (KCG41_01710) | - | 355757..356047 (+) | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| KCG41_RS01715 (KCG41_01715) | - | 356028..357395 (+) | 1368 | WP_001793488.1 | DEAD/DEAH box helicase | - |
| KCG41_RS01720 (KCG41_01720) | - | 357408..357845 (+) | 438 | WP_042909058.1 | transcriptional regulator | - |
| KCG41_RS01725 (KCG41_01725) | - | 358002..358316 (+) | 315 | WP_000160683.1 | HNH endonuclease | - |
| KCG41_RS01730 (KCG41_01730) | - | 358438..358743 (+) | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| KCG41_RS01735 (KCG41_01735) | - | 358733..360424 (+) | 1692 | WP_000153551.1 | terminase TerL endonuclease subunit | - |
| KCG41_RS01740 (KCG41_01740) | - | 360429..361667 (+) | 1239 | WP_001100669.1 | phage portal protein | - |
| KCG41_RS01745 (KCG41_01745) | - | 361651..362424 (+) | 774 | WP_031885389.1 | head maturation protease, ClpP-related | - |
| KCG41_RS01750 (KCG41_01750) | - | 362436..363599 (+) | 1164 | WP_001142738.1 | phage major capsid protein | - |
| KCG41_RS01755 (KCG41_01755) | - | 363668..363946 (+) | 279 | WP_000050973.1 | head-tail connector protein | - |
| KCG41_RS01760 (KCG41_01760) | - | 363958..364290 (+) | 333 | WP_000395499.1 | hypothetical protein | - |
| KCG41_RS01765 (KCG41_01765) | - | 364287..364688 (+) | 402 | WP_000110019.1 | hypothetical protein | - |
| KCG41_RS01770 (KCG41_01770) | - | 364689..365084 (+) | 396 | WP_001636966.1 | DUF3168 domain-containing protein | - |
| KCG41_RS01775 (KCG41_01775) | - | 365119..365760 (+) | 642 | WP_031768043.1 | major tail protein | - |
| KCG41_RS01780 (KCG41_01780) | - | 365852..366307 (+) | 456 | WP_031768047.1 | Ig-like domain-containing protein | - |
| KCG41_RS01785 (KCG41_01785) | - | 366365..366715 (+) | 351 | WP_000589165.1 | hypothetical protein | - |
| KCG41_RS01790 (KCG41_01790) | - | 366757..366915 (+) | 159 | WP_000438833.1 | hypothetical protein | - |
| KCG41_RS01795 (KCG41_01795) | - | 366929..373105 (+) | 6177 | WP_212593069.1 | phage tail tape measure protein | - |
| KCG41_RS01800 (KCG41_01800) | - | 373105..373929 (+) | 825 | WP_001190533.1 | phage tail family protein | - |
| KCG41_RS01805 (KCG41_01805) | - | 373938..375521 (+) | 1584 | WP_000384460.1 | prophage endopeptidase tail family protein | - |
| KCG41_RS01810 (KCG41_01810) | - | 375521..375811 (+) | 291 | WP_000179864.1 | hypothetical protein | - |
| KCG41_RS01815 (KCG41_01815) | - | 375827..377737 (+) | 1911 | WP_119484259.1 | hypothetical protein | - |
| KCG41_RS01820 (KCG41_01820) | - | 377737..379203 (+) | 1467 | WP_119484261.1 | BppU family phage baseplate upper protein | - |
| KCG41_RS01825 (KCG41_01825) | - | 379203..379592 (+) | 390 | WP_001166606.1 | DUF2977 domain-containing protein | - |
| KCG41_RS01830 (KCG41_01830) | - | 379585..379749 (+) | 165 | WP_016187456.1 | XkdX family protein | - |
| KCG41_RS01835 (KCG41_01835) | - | 379795..380094 (+) | 300 | WP_000466774.1 | DUF2951 family protein | - |
| KCG41_RS01840 (KCG41_01840) | - | 380230..380667 (+) | 438 | WP_061730387.1 | phage holin | - |
| KCG41_RS01845 (KCG41_01845) | - | 380648..382093 (+) | 1446 | WP_016187533.1 | SH3 domain-containing protein | - |
| KCG41_RS01850 (KCG41_01850) | - | 382523..383359 (+) | 837 | WP_000675478.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15784.48 Da Isoelectric Point: 8.4826
>NTDB_id=557566 KCG41_RS01595 WP_000934384.1 346399..346824(+) (ssbA) [Staphylococcus aureus strain 17Gst354]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=557566 KCG41_RS01595 WP_000934384.1 346399..346824(+) (ssbA) [Staphylococcus aureus strain 17Gst354]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGTGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGTGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
73.729 |
83.688 |
0.617 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
46.087 |
81.56 |
0.376 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.068 |
83.688 |
0.369 |