Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   J7D36_RS01670 Genome accession   NZ_CP073060
Coordinates   355096..355554 (+) Length   152 a.a.
NCBI ID   WP_021510152.1    Uniprot ID   A0AAV3K4P4
Organism   Acinetobacter baumannii strain DETAB-P39     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350096..360554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D36_RS01650 (J7D36_01650) - 351487..352374 (+) 888 WP_021510155.1 metal-dependent hydrolase -
  J7D36_RS01655 (J7D36_01655) - 352505..353095 (+) 591 WP_000846931.1 LemA family protein -
  J7D36_RS01660 (J7D36_01660) - 353117..354199 (+) 1083 WP_021510154.1 TPM domain-containing protein -
  J7D36_RS01665 (J7D36_01665) - 354193..354753 (+) 561 WP_021510153.1 TPM domain-containing protein -
  J7D36_RS01670 (J7D36_01670) pilA 355096..355554 (+) 459 WP_021510152.1 pilin Machinery gene
  J7D36_RS01675 (J7D36_01675) - 355822..356211 (-) 390 WP_002125552.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  J7D36_RS01680 (J7D36_01680) vapB 356223..356450 (-) 228 WP_002125542.1 type II toxin-antitoxin system VapB family antitoxin -
  J7D36_RS01685 (J7D36_01685) - 356603..358231 (+) 1629 WP_021510151.1 PglL family O-oligosaccharyltransferase -
  J7D36_RS01690 (J7D36_01690) bfr 358272..358736 (-) 465 WP_000678123.1 bacterioferritin -
  J7D36_RS01695 (J7D36_01695) - 358981..359175 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  J7D36_RS01700 (J7D36_01700) - 359385..359768 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15132.34 Da        Isoelectric Point: 4.9984

>NTDB_id=557496 J7D36_RS01670 WP_021510152.1 355096..355554(+) (pilA) [Acinetobacter baumannii strain DETAB-P39]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIARGEASSALASITPLKTAVEDKLANGTTDDLADVTKLGTTANANGL
GVITSTIDEATGGGSLIFTLSGSASPKTKGGVITLARDAASGTWTCTVNAKLTDYAPKGCSVAAAPPAPPAP

Nucleotide


Download         Length: 459 bp        

>NTDB_id=557496 J7D36_RS01670 WP_021510152.1 355096..355554(+) (pilA) [Acinetobacter baumannii strain DETAB-P39]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTTGTAGCGATTATTGGTATTTTAGCAGCGATCGCGAT
TCCTGCTTATCAAAACTATATTGCTCGTGGTGAGGCAAGTTCTGCTTTGGCTAGTATTACTCCATTGAAGACTGCTGTTG
AAGATAAGTTAGCAAATGGTACAACTGATGATTTAGCAGATGTTACTAAATTAGGTACAACAGCAAATGCAAATGGTTTA
GGTGTTATTACTTCTACTATTGATGAAGCTACTGGTGGTGGTAGTTTAATTTTTACATTGAGTGGTTCTGCTAGTCCTAA
AACTAAAGGTGGTGTAATTACATTAGCGCGTGATGCTGCTTCGGGTACTTGGACATGTACTGTTAATGCGAAATTAACAG
ACTATGCACCAAAAGGTTGTAGTGTTGCTGCTGCTCCTCCTGCTCCTCCTGCTCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-140)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

54.667

98.684

0.539
  pilA Acinetobacter baumannii strain A118

47.586

95.395

0.454
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.517

95.395

0.434
  comP Acinetobacter baylyi ADP1

43.137

100

0.434
  pilA Ralstonia pseudosolanacearum GMI1000

40.123

100

0.428
  pilA Vibrio cholerae strain A1552

42.857

96.711

0.414
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.857

96.711

0.414
  pilA Vibrio cholerae C6706

42.857

96.711

0.414
  pilA2 Legionella pneumophila strain ERS1305867

41.611

98.026

0.408
  pilA2 Legionella pneumophila str. Paris

41.333

98.684

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.571

92.105

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

48.78

80.921

0.395