Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   J9B93_RS01745 Genome accession   NZ_CP072843
Coordinates   321585..322022 (-) Length   145 a.a.
NCBI ID   WP_210602038.1    Uniprot ID   -
Organism   Bacillus velezensis strain VY03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 316585..327022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9B93_RS19440 - 317157..317282 (-) 126 Protein_297 hypothetical protein -
  J9B93_RS01710 (J9B93_01710) - 317443..318645 (+) 1203 WP_025853783.1 GTP-binding protein -
  J9B93_RS01715 (J9B93_01715) - 318710..319846 (+) 1137 WP_048368274.1 zinc-dependent alcohol dehydrogenase -
  J9B93_RS01720 (J9B93_01720) - 319861..320295 (+) 435 WP_021494203.1 RDD family protein -
  J9B93_RS01725 (J9B93_01725) - 320412..320687 (+) 276 WP_369719109.1 YckD family protein -
  J9B93_RS19705 (J9B93_01730) - 320791..320874 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  J9B93_RS01735 (J9B93_01735) - 320906..321124 (+) 219 Protein_303 family 1 glycosylhydrolase -
  J9B93_RS01740 (J9B93_01740) nin/comJ 321165..321563 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  J9B93_RS01745 (J9B93_01745) nucA/comI 321585..322022 (-) 438 WP_210602038.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J9B93_RS01750 (J9B93_01750) hxlB 322381..322938 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  J9B93_RS01755 (J9B93_01755) hxlA 322935..323570 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  J9B93_RS01760 (J9B93_01760) - 323802..324164 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=556074 J9B93_RS01745 WP_210602038.1 321585..322022(-) (nucA/comI) [Bacillus velezensis strain VY03]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGIHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=556074 J9B93_RS01745 WP_210602038.1 321585..322022(-) (nucA/comI) [Bacillus velezensis strain VY03]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCAATAAAAGAAGGGCATTCCAGCATTTGCACCATTGATAGAGACGGAATACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641