Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   L1A02_RS07560 Genome accession   NZ_CP090873
Coordinates   1552797..1553510 (-) Length   237 a.a.
NCBI ID   WP_016170550.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS16     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547797..1558510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A02_RS07530 (L1A02_07530) sph 1548575..1549399 (-) 825 Protein_1469 sphingomyelin phosphodiesterase -
  L1A02_RS07535 (L1A02_07535) - 1549456..1550493 (-) 1038 WP_103246455.1 tyrosine-type recombinase/integrase -
  L1A02_RS07540 (L1A02_07540) - 1550552..1551016 (-) 465 WP_000825947.1 hypothetical protein -
  L1A02_RS07545 (L1A02_07545) - 1551116..1551298 (-) 183 WP_000705248.1 hypothetical protein -
  L1A02_RS07550 (L1A02_07550) - 1551502..1551843 (-) 342 WP_000591749.1 hypothetical protein -
  L1A02_RS07555 (L1A02_07555) - 1551849..1552781 (-) 933 WP_234863231.1 exonuclease domain-containing protein -
  L1A02_RS07560 (L1A02_07560) irvR 1552797..1553510 (-) 714 WP_016170550.1 XRE family transcriptional regulator Regulator
  L1A02_RS07565 (L1A02_07565) - 1553473..1553646 (+) 174 WP_001801500.1 hypothetical protein -
  L1A02_RS07570 (L1A02_07570) - 1553643..1553906 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  L1A02_RS07575 (L1A02_07575) - 1553922..1554137 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  L1A02_RS07580 (L1A02_07580) - 1554126..1554455 (-) 330 WP_016170551.1 hypothetical protein -
  L1A02_RS07585 (L1A02_07585) - 1554506..1555249 (+) 744 WP_016170552.1 phage antirepressor KilAC domain-containing protein -
  L1A02_RS07590 (L1A02_07590) - 1555274..1555357 (+) 84 Protein_1481 hypothetical protein -
  L1A02_RS07595 (L1A02_07595) - 1555366..1555569 (-) 204 WP_031768726.1 hypothetical protein -
  L1A02_RS07600 (L1A02_07600) - 1555628..1555867 (+) 240 WP_001294156.1 hypothetical protein -
  L1A02_RS07605 (L1A02_07605) - 1556194..1556520 (+) 327 WP_001025595.1 hypothetical protein -
  L1A02_RS07610 (L1A02_07610) - 1556517..1556616 (+) 100 Protein_1485 hypothetical protein -
  L1A02_RS07615 (L1A02_07615) - 1556765..1557085 (+) 321 WP_001120936.1 DUF771 domain-containing protein -
  L1A02_RS07620 (L1A02_07620) - 1557082..1557243 (+) 162 WP_000066011.1 DUF1270 domain-containing protein -
  L1A02_RS07625 (L1A02_07625) - 1557336..1557638 (+) 303 WP_016170555.1 DUF2482 family protein -
  L1A02_RS07630 (L1A02_07630) - 1557643..1557903 (+) 261 WP_000291504.1 DUF1108 family protein -
  L1A02_RS07635 (L1A02_07635) - 1557912..1558175 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27016.64 Da        Isoelectric Point: 5.4202

>NTDB_id=555880 L1A02_RS07560 WP_016170550.1 1552797..1553510(-) (irvR) [Staphylococcus aureus strain SAUR_BFS16]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=555880 L1A02_RS07560 WP_016170550.1 1552797..1553510(-) (irvR) [Staphylococcus aureus strain SAUR_BFS16]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAAAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGACGGTGAAATTATATTCGTAGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401