Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   LT978_RS03710 Genome accession   NZ_CP090838
Coordinates   726416..728731 (+) Length   771 a.a.
NCBI ID   WP_109567664.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721416..733731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS03690 (LT978_03685) - 723498..724169 (+) 672 WP_043867421.1 DsbA family protein -
  LT978_RS03695 (LT978_03690) - 724159..724578 (+) 420 WP_007410015.1 disulfide oxidoreductase -
  LT978_RS03700 (LT978_03695) - 724612..725412 (-) 801 WP_024085792.1 zinc-dependent metalloprotease -
  LT978_RS03705 (LT978_03700) - 725635..726243 (+) 609 WP_003151732.1 trimeric intracellular cation channel family protein -
  LT978_RS03710 (LT978_03705) helD 726416..728731 (+) 2316 WP_109567664.1 RNA polymerase recycling motor HelD Machinery gene
  LT978_RS03715 (LT978_03710) - 728906..730714 (+) 1809 WP_044052904.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  LT978_RS03720 (LT978_03715) cysI 730742..732457 (+) 1716 WP_139889960.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87912.88 Da        Isoelectric Point: 6.2388

>NTDB_id=555628 LT978_RS03710 WP_109567664.1 726416..728731(+) (helD) [Bacillus amyloliquefaciens strain TL106]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKHLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNKDALSVRLAAIAYKASSAFQAMIDRYAGSLSVSGLICKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTGNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
TIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARREQLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYNSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=555628 LT978_RS03710 WP_109567664.1 726416..728731(+) (helD) [Bacillus amyloliquefaciens strain TL106]
ATGGCAAAACGTGATAAAGAATGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAATTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATACTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTCATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAATATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGTGATGAAAAAAGCAAACATCTCATCGTTCAGGGAGCTGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTGTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATAAGGACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCATCAGCTTTTCAGGCCATGATTGACCG
CTATGCCGGGTCGCTTTCGGTCTCCGGCCTGATATGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CGGAAACGCATTTGCAGAACGGTCGCTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
ACCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCATACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCGGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCTAAAAAAGTGTTTCAGGCAGTCAGCGCCGAGAGCGGTGTCCGTTTAATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGACGCCTCTGCTGCCCAGTACAATAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATTTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-685)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.753

99.87

0.667