Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   J6320_RS20500 Genome accession   NZ_CP072782
Coordinates   2690703..2691317 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain HY9901     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685703..2696317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6320_RS20480 (J6320_20370) - 2685987..2686904 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  J6320_RS20485 (J6320_20375) - 2687155..2688825 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  J6320_RS20490 (J6320_20380) can 2689107..2689775 (+) 669 WP_005379996.1 carbonate dehydratase -
  J6320_RS20495 (J6320_20385) hpt 2689853..2690383 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  J6320_RS20500 (J6320_20390) opaR 2690703..2691317 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  J6320_RS20505 (J6320_20395) lpdA 2691463..2692890 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  J6320_RS20510 (J6320_20400) aceF 2693158..2695050 (-) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=555628 J6320_RS20500 WP_005379994.1 2690703..2691317(+) (opaR) [Vibrio alginolyticus strain HY9901]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=555628 J6320_RS20500 WP_005379994.1 2690703..2691317(+) (opaR) [Vibrio alginolyticus strain HY9901]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711