Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   THIMO_RS04980 Genome accession   NC_019940
Coordinates   1129587..1130465 (-) Length   292 a.a.
NCBI ID   WP_015279998.1    Uniprot ID   L0GSV8
Organism   Thioflavicoccus mobilis 8321     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124587..1135465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THIMO_RS04960 (Thimo_1044) recG 1125176..1127284 (+) 2109 WP_015279994.1 ATP-dependent DNA helicase RecG -
  THIMO_RS04965 (Thimo_1045) ubiA 1127390..1128295 (+) 906 WP_015279995.1 4-hydroxybenzoate octaprenyltransferase -
  THIMO_RS04970 (Thimo_1046) - 1128532..1128804 (-) 273 WP_015279996.1 hypothetical protein -
  THIMO_RS04975 (Thimo_1047) coaE 1128976..1129590 (-) 615 WP_015279997.1 dephospho-CoA kinase -
  THIMO_RS04980 (Thimo_1048) pilD 1129587..1130465 (-) 879 WP_015279998.1 A24 family peptidase Machinery gene
  THIMO_RS04985 (Thimo_1049) pilC 1130700..1131953 (-) 1254 WP_015279999.1 type II secretion system F family protein Machinery gene
  THIMO_RS04990 (Thimo_1050) pilB 1131959..1133674 (-) 1716 WP_015280000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  THIMO_RS04995 (Thimo_1051) - 1134321..1135154 (-) 834 WP_015280001.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31691.32 Da        Isoelectric Point: 6.7373

>NTDB_id=55432 THIMO_RS04980 WP_015279998.1 1129587..1130465(-) (pilD) [Thioflavicoccus mobilis 8321]
MAWLETIGDNPILLLTITGLFGLVIGSFLNVVILRLPQVMQAAWQRDCAELAGEAAAEAASGEPLTLSKPPSRCRHCGHR
IRFYENIPILSFLVLRGRCSACHEAIGWRYPAIEALTALLSVAVVWHFGPTLAGAAALVLTWGLISLAIIDLETQFLPDA
ITLPLLWFGLLLSLTGIFADSRSAILGAAIGYLSLWSLFHLFRLATGKEGMGYGDFKLFALFGAWLGWTYLPQIILLSAF
SGAIIGVMLILSRGHDRQAPLPFGPYLAIAGWISLIWGDTINQGYLNWSGLG

Nucleotide


Download         Length: 879 bp        

>NTDB_id=55432 THIMO_RS04980 WP_015279998.1 1129587..1130465(-) (pilD) [Thioflavicoccus mobilis 8321]
ATGGCATGGTTGGAAACGATCGGAGATAACCCGATCCTGCTCCTGACGATCACTGGCCTATTCGGGCTCGTCATCGGCAG
CTTCCTGAACGTCGTGATATTGCGCCTACCGCAAGTGATGCAGGCCGCCTGGCAACGCGATTGCGCCGAGCTCGCGGGAG
AGGCAGCTGCGGAAGCAGCATCGGGTGAGCCCCTGACGCTGAGCAAACCCCCGTCGCGCTGCCGGCACTGCGGGCACCGG
ATCCGCTTCTACGAGAACATACCCATCCTGAGTTTTCTCGTGCTGCGCGGGCGCTGCTCAGCCTGCCACGAGGCGATCGG
CTGGCGCTATCCAGCCATCGAGGCCCTGACGGCGCTCCTGTCCGTGGCCGTCGTCTGGCACTTCGGACCAACGCTCGCCG
GCGCAGCAGCCCTGGTGCTCACCTGGGGCCTGATCAGCCTGGCCATTATCGACCTCGAAACCCAGTTCCTCCCGGATGCG
ATCACGCTGCCGCTCCTTTGGTTCGGCTTGCTCCTGAGCCTAACCGGGATATTTGCCGACAGTCGCTCGGCTATCCTCGG
GGCAGCCATCGGCTACTTGAGCCTCTGGAGCCTATTCCACCTGTTCCGGCTGGCGACCGGCAAAGAGGGCATGGGTTACG
GCGACTTCAAGCTTTTCGCCTTGTTCGGCGCCTGGCTCGGTTGGACGTATCTGCCACAGATCATCCTGCTTTCGGCGTTC
TCAGGTGCCATTATCGGCGTGATGCTGATCCTGTCCCGAGGACATGACCGGCAGGCGCCGCTCCCGTTCGGCCCCTATCT
CGCCATCGCCGGCTGGATCAGCCTGATCTGGGGCGATACCATCAACCAGGGCTATCTCAACTGGAGCGGGCTGGGGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0GSV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

50.35

97.945

0.493
  pilD Vibrio cholerae strain A1552

49.135

98.973

0.486
  pilD Acinetobacter nosocomialis M2

51.673

92.123

0.476
  pilD Acinetobacter baumannii D1279779

51.301

92.123

0.473
  pilD Neisseria gonorrhoeae MS11

42.647

93.151

0.397

Multiple sequence alignment