Detailed information NTG0551074

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: J6342_RS05030
• Genome accession: NZ_CP072196
• Coordinates: 1045307..1046410 (-)
• Length: 367 a.a.
• NCBI ID: WP_014938005.1
• Uniprot ID: J9R5B4
• Organism: Riemerella anatipestifer strain 20190604J2-1
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1040307..1051410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6342_RS05005 (J6342_05005)	comF	1041500..1042153 (-)	654	WP_038693798.1	ComF family protein	Machinery gene
J6342_RS05015 (J6342_05015)	-	1042380..1042931 (-)	552	WP_014938008.1	hypothetical protein	-
J6342_RS05020 (J6342_05020)	-	1042983..1043633 (-)	651	WP_014938007.1	HD domain-containing protein	-
J6342_RS05025 (J6342_05025)	gdhA	1043765..1045123 (-)	1359	WP_014938006.1	NADP-specific glutamate dehydrogenase	-
J6342_RS05030 (J6342_05030)	dprA	1045307..1046410 (-)	1104	WP_014938005.1	DNA-processing protein DprA	Machinery gene
J6342_RS05035 (J6342_05035)	-	1046413..1046790 (-)	378	WP_014938004.1	group III truncated hemoglobin	-
J6342_RS05040 (J6342_05040)	ruvC	1046801..1047355 (-)	555	WP_014938003.1	crossover junction endodeoxyribonuclease RuvC	-
J6342_RS05045 (J6342_05045)	-	1047408..1047881 (-)	474	WP_038693795.1	Lrp/AsnC family transcriptional regulator	-
J6342_RS05050 (J6342_05050)	-	1048229..1051159 (+)	2931	WP_038693793.1	SusC/RagA family TonB-linked outer membrane protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40200.07 Da
• Isoelectric Point: 6.6101

>NTDB_id=551074 J6342_RS05030 WP_014938005.1 1045307..1046410(-) (dprA) [Riemerella anatipestifer strain 20190604J2-1]
MVNAEEILYSIALRRSPLVGDVTFANLVGEVGSAKEVWSLSQSELRKISGIGKQIASGIGDESLLKFAEREVEFCIKNEI
KINLRHLNQLPRLLGECYDAPAILFQKGDYDDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIVYPSKHKILAEEILSNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPLVDVALTPVQKPIYDA
IKGGNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRKYSII

Nucleotide

• Length: 1104 bp

>NTDB_id=551074 J6342_RS05030 WP_014938005.1 1045307..1046410(-) (dprA) [Riemerella anatipestifer strain 20190604J2-1]
ATGGTAAATGCAGAAGAAATTTTATATTCTATTGCTTTACGGCGAAGCCCTTTGGTGGGAGATGTTACATTTGCAAATTT
AGTGGGCGAAGTTGGTTCTGCTAAGGAGGTTTGGAGTTTGTCTCAATCGGAGTTAAGAAAAATATCAGGCATAGGTAAAC
AAATTGCCTCAGGTATTGGTGATGAAAGCCTTTTGAAATTTGCCGAAAGGGAAGTTGAGTTCTGCATTAAAAACGAGATA
AAAATCAATCTAAGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCAGCTATTCTTTTTCAAAA
AGGAGATTATGACGATACCGCTAATAATATTAGCATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGGTTGGCACTAGGTACAGACGGGATAGCTCAT
CAAGAGGCTTTAAAAAATAACATAAAAACTTCAGCAGTTTTAGCACATGGTTTACATATTGTTTATCCGTCTAAACATAA
AATTCTTGCTGAAGAAATATTAAGTAATGGAGGAGCTTTGTTCTCTGAATTCTGCTCTGATGAAAAACCAGATAGAGAAC
ATTTTTTGCAAAGGAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCTGGCGGTTCT
ATTAGTACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTCTTGCGGGGCGTCTTACTGATAAGTATAGCCA
AGGCTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTTAGTTGATGTCGCTTTAACTCCTGTTCAAAAACCTATTTATGATGCT
ATTAAAGGAGGTAATGATATTTCTTTAGATGACTTGTCAGAAAAATTAAATCAACCCATTTCTAAAGTGTTTCCAGTTTT
GTTAGAATTAGAATTATTGGGGTTGATAAGAGCAAATTCTGGGAGGAAATATTCTATCATTTAG

Domains

Predicted by InterproScan.

• DprA winged helix domain (DprA_WH) (309-361)

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

3D structure

• AlphaFold DB: J9R5B4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	92.916	100	0.929