Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J6M00_RS08525 Genome accession   NZ_CP072188
Coordinates   1748052..1748705 (+) Length   217 a.a.
NCBI ID   WP_153929508.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190121E1-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1743052..1753705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6M00_RS08495 (J6M00_08490) - 1743417..1743794 (+) 378 WP_049334428.1 group III truncated hemoglobin -
  J6M00_RS08500 (J6M00_08495) dprA 1743797..1744900 (+) 1104 WP_049334427.1 DNA-processing protein DprA Machinery gene
  J6M00_RS08505 (J6M00_08500) gdhA 1745084..1746442 (+) 1359 WP_049334426.1 NADP-specific glutamate dehydrogenase -
  J6M00_RS08510 (J6M00_08505) - 1746571..1747221 (+) 651 WP_153929506.1 HD domain-containing protein -
  J6M00_RS08515 (J6M00_08510) - 1747275..1747826 (+) 552 WP_153929507.1 hypothetical protein -
  J6M00_RS08525 (J6M00_08520) comF 1748052..1748705 (+) 654 WP_153929508.1 ComF family protein Machinery gene
  J6M00_RS08530 (J6M00_08525) - 1749017..1749991 (+) 975 WP_153929509.1 ribonucleotide-diphosphate reductase subunit beta -
  J6M00_RS08535 (J6M00_08530) - 1750042..1751697 (+) 1656 WP_153929510.1 ribonucleoside-diphosphate reductase subunit alpha -
  J6M00_RS08540 (J6M00_08535) - 1751847..1752737 (+) 891 WP_153929511.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25173.30 Da        Isoelectric Point: 9.0181

>NTDB_id=551029 J6M00_RS08525 WP_153929508.1 1748052..1748705(+) (comF) [Riemerella anatipestifer strain 20190121E1-3]
MFLDFFLPNRCLKCNLIIPSDEIVCWACKSHLNFTHDDFGGKSEFYQKVILKFPVTKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSSQGIDVLTSIPLHPKKQRERGYNQLHLFTKILSQLQGIPYSHYLLKRNFYSKPQALKQKL
DREKIQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=551029 J6M00_RS08525 WP_153929508.1 1748052..1748705(+) (comF) [Riemerella anatipestifer strain 20190121E1-3]
ATGTTTTTAGATTTTTTTCTACCCAATAGATGTCTAAAGTGTAATCTTATTATTCCTTCTGATGAAATTGTTTGCTGGGC
ATGTAAGTCTCATCTTAATTTTACTCATGATGATTTTGGAGGAAAGTCAGAATTTTATCAAAAAGTTATTCTTAAGTTTC
CTGTAACTAAAGCTTTTAGTTTGATGAAGTATGAGAAAAAAGAGCTTTCTCAAGACATTATACATGCCTTAAAGTACCAT
TCTATGGAACGAGTGGGTAAGGTGCTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTAGTCAAGGGATAGATGTATT
AACTAGTATTCCGCTTCATCCTAAAAAACAAAGAGAAAGAGGTTATAATCAGCTACATTTGTTTACAAAAATATTATCTC
AGTTGCAGGGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAGTTG
GATAGAGAAAAAATACAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACATATCTTACTGATAGATGATGTATA
CACTACAGGAAACACAATGAGTAAAGCAGTTTGGGAGCTTTTGAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(128-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

93.548

100

0.935