Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   J5W00_RS05960 Genome accession   NZ_CP072055
Coordinates   1169686..1170369 (+) Length   227 a.a.
NCBI ID   WP_002011351.1    Uniprot ID   R8DDT2
Organism   Bacillus mycoides strain JAS85/1     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 1164686..1175369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5W00_RS05940 (J5W00_05940) - 1165668..1167314 (+) 1647 WP_002125935.1 peptide ABC transporter substrate-binding protein -
  J5W00_RS05945 (J5W00_05945) - 1167345..1167548 (-) 204 WP_215560969.1 hypothetical protein -
  J5W00_RS05950 (J5W00_05950) spx 1168129..1168524 (+) 396 WP_002011348.1 transcriptional regulator Spx -
  J5W00_RS05955 (J5W00_05955) - 1168575..1169249 (-) 675 WP_002030376.1 TerC family protein -
  J5W00_RS05960 (J5W00_05960) mecA 1169686..1170369 (+) 684 WP_002011351.1 adaptor protein MecA Regulator
  J5W00_RS05965 (J5W00_05965) - 1170442..1171986 (+) 1545 WP_215560970.1 cardiolipin synthase -
  J5W00_RS05970 (J5W00_05970) - 1172078..1173313 (+) 1236 WP_078214020.1 competence protein CoiA -
  J5W00_RS05975 (J5W00_05975) pepF 1173364..1175190 (+) 1827 WP_002134970.1 oligoendopeptidase F Regulator

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 27029.17 Da        Isoelectric Point: 4.0116

>NTDB_id=550227 J5W00_RS05960 WP_002011351.1 1169686..1170369(+) (mecA) [Bacillus mycoides strain JAS85/1]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQELVEEVEEQVGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELH
SFEDRYYVYVEFDEVLHDEEEIDRILSIVLEYGEESTLTIHRVSEYGKQVVKERALETIRNNFPPKM

Nucleotide


Download         Length: 684 bp        

>NTDB_id=550227 J5W00_RS05960 WP_002011351.1 1169686..1170369(+) (mecA) [Bacillus mycoides strain JAS85/1]
TTGGATATTGAAAGAATTAATGACCATACGATGAAATTTTTTATTACGTACATTGATATAGAGGATAGAGGGTTTAATCG
TGAAGAAATTTGGTATGATCGCGAACGAAGTGAAGAGCTCTTTTGGGAGATGATGGACGAAGCTCGTGATCATGATGATT
TCTTTATCGATGGGCCGTTATGGATCCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTAACGAAAGCGGAGCTT
TCAAAGGATGGACAAAAGCTGGAACTACCAATAGGTGTAGACAAAATTATAGACATTCCTCTAGATGAAGGCATCGAATC
ATTATTCCAGCAAGAATTAGTGGAAGAGGTAGAAGAACAAGTAGGAACAAACTTTAATGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTTATTTCATTAAGTCATCGTCTTATCTTTGAAGATATAAAAGATGAATTACAT
TCATTTGAGGACCGATATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATTGATCGTATTTTAAG
TATTGTTTTAGAATATGGAGAAGAATCTACTTTAACGATTCACCGTGTAAGTGAGTATGGGAAACAGGTTGTGAAAGAGC
GTGCGCTTGAGACAATTCGCAACAATTTCCCTCCTAAAATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB R8DDT2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

54.386

100

0.546