Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   J5N61_RS01650 Genome accession   NZ_CP071973
Coordinates   355629..355955 (+) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain INC8271     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 350629..360955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS01625 (J5N61_01625) hemC 351084..352001 (+) 918 WP_004916978.1 hydroxymethylbilane synthase -
  J5N61_RS01630 (J5N61_01630) - 352003..352779 (+) 777 WP_212387891.1 uroporphyrinogen-III synthase -
  J5N61_RS01635 (J5N61_01635) - 352776..353606 (+) 831 WP_042892807.1 hypothetical protein -
  J5N61_RS01640 (J5N61_01640) - 353613..354806 (+) 1194 WP_087540386.1 hypothetical protein -
  J5N61_RS01645 (J5N61_01645) - 354815..355246 (+) 432 WP_004958542.1 acyl-CoA thioesterase -
  J5N61_RS01650 (J5N61_01650) hns 355629..355955 (+) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  J5N61_RS01655 (J5N61_01655) gspN 356136..356879 (+) 744 WP_204379394.1 type II secretion system protein N -
  J5N61_RS01660 (J5N61_01660) - 356879..357727 (+) 849 WP_204379392.1 type II secretion system protein N -
  J5N61_RS01665 (J5N61_01665) gspD 357769..360024 (+) 2256 WP_126132050.1 type II secretion system secretin GspD -
  J5N61_RS01670 (J5N61_01670) - 360088..360699 (+) 612 WP_212387908.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=549539 J5N61_RS01650 WP_004958548.1 355629..355955(+) (hns) [Acinetobacter junii strain INC8271]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=549539 J5N61_RS01650 WP_004958548.1 355629..355955(+) (hns) [Acinetobacter junii strain INC8271]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAGCCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907